YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17946197
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKMVCNLIS QGVIAIFGPS TGSSSDIIAS ICDTLDIPHI VYDWIPNESI PDREHSTMTL  60
   61 NVHPDNLLLS QGLAEIVQSF AWRSFTVVYE TDKELQQLQD ILQVGEPISN PTTVKQLGPG 120
  121 DDHRPFLKEI KLSTDNCLIL HCAPDNLLKI LQQANELKML GEYQSVFIPL LDTHSIDFGE 180
  181 LSGVEANITT VRLMDPSDFH VKNVVHDWEE REKREGRYFK VDPNRVKSQM ILLNDAVWLF 240
  241 SKGLTELGIF EELTAPDLEC RRKKPWPFGK RIIEFIKARS EETSTGRIDF NENGQRSFFT 300
  301 LRFMELNSDG FLDLATWDPV NGLDVLNDDE ESEKRVGQKL SNKTFIVSSR LGAPFLTLRE 360
  361 PQEGEILTGN SRYEGYSIDL INEIAKMLNF KFEFRMSPDG KYGALNKVTQ TWDGIVRQLI 420
  421 DGNADLGICD LTMTSSRRQA VDFTPPFMTL GISILFSKPP TPPTDLFSFL SPFSLDVWIY 480
  481 MGSAYLFISL LLFALARMAP DDWENPHPCK

Type	Start	End	Confidence
Non-Cytoplasmic	1	476	0.89
Transmembrane Helix	477	496	0.95
Cytoplasmic	497	510	0.86