YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17946187
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFEEILAKC GNSSRYQFVL LALYGYLMVV VSMHYFSQNV ISFVPDHWCY HEQLENRSFA  60
   61 EIEKIYSQFE KPSCTRLEKI DEDGQNHTLS RERCNRWIYK YDFGYKSMNT ELNWVCDEAY 120
  121 KARVGQSLFF VGSVCGTLAF GLLGDRIGRI RALILANWCG FLGDFSTIFA GSLTSFSISR 180
  181 FISGLAADAN SYLMYILILE YVSPSLRNVG LNTVLGSFYC LGLIGACWLA VWVGHWRIFL 240
  241 ACSSVPLLLV TLFYFLVQES AQWLVTRNDV DGAIRRLERV AKINRRQVAD KDFKDFRIYC 300
  301 EQHYRKDKNQ

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	123	0.96
Transmembrane Helix	124	144	0.91
Cytoplasmic	145	153	0.80
Transmembrane Helix	154	173	0.91
Non-Cytoplasmic	174	180	0.61
Transmembrane Helix	181	199	0.75
Cytoplasmic	200	208	0.63
Transmembrane Helix	209	232	0.88
Non-Cytoplasmic	233	236	0.64
Transmembrane Helix	237	257	0.93
Cytoplasmic	258	310	0.79