YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CC50C_MACFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETPQHCLS RLPDNSALKQ QELPAHRLYF TARRVLFVFF TTGIFCLCMG IILILSARST  60
   61 QEIEINYTRI CANCAKLREN ASNFDKECTC SIPFYLSGKM MGNVYMYYKL YGFYQNLYRY 120
  121 VRSRSNRQLV GKDVKAVEDC APFKMSDNKT PIVPCGAIAN SMFNDTIILS HNINSSVQIK 180
  181 VPMLKSGLTW WTDKYVKFQN PSSKNLADEF RGTTKPPNWP KPIYDLDKKD PRNNGFLNDD 240
  241 FIVWMRAAAF PTFKKLYGRL NRTHHFIEGL PAGNYSFNIT YNFPVTRFQG EKSVVLSTLT 300
  301 WCGGNSLFLG LAYTVTGAIT WLASFTMMAI HITLKNKQMS FFHQ

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	55	0.96
Non-Cytoplasmic	56	308	0.92
Transmembrane Helix	309	332	0.82
Cytoplasmic	333	344	0.84