YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945980
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	44	0.75
Non-Cytoplasmic	45	68	0.80
Transmembrane Helix	69	88	0.70
Cytoplasmic	89	94	0.76
Transmembrane Helix	95	117	0.88
Non-Cytoplasmic	118	123	0.64
Transmembrane Helix	124	141	0.60
Cytoplasmic	142	156	0.69
Transmembrane Helix	157	179	0.76
Non-Cytoplasmic	180	186	0.76
Transmembrane Helix	187	207	0.94
Cytoplasmic	208	243	0.95
Transmembrane Helix	244	264	0.80
Non-Cytoplasmic	265	289	0.83
Transmembrane Helix	290	311	0.88
Cytoplasmic	312	327	0.76
Transmembrane Helix	328	348	0.89
Non-Cytoplasmic	349	353	0.74
Transmembrane Helix	354	375	0.80
Cytoplasmic	376	386	0.60
Transmembrane Helix	387	411	0.85
Non-Cytoplasmic	412	419	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDMEEIPKT VPRLGLRHLQ AGLLFYGLAA NTVLQLNVSV AVVAMTNETT SNNSDPPHYN  60
   61 WSEEKKSYIL SSYYWGCALA QFPAGYLCKR FGSKAVLFWG TLGSSLLSAL TTYGVYAGGW 120
  121 KAYCAIRLLQ GLCQVTWPCI HQHLANWCPT AERTRLGAFA YTGFDCGNVL AMYGAGMIAS 180
  181 SSLGWPGISY SAAGLGLIWC GLWLLLGANK ASDARFIGEA EKAYIVGDIQ RSERKGPKKM 240
  241 EIPWKGIFTS VPVYALLCAR CADSWGLTTM QTELPTYLSG VLKLDMKSNA VFSALPFLLM 300
  301 WVMCYVYLII ADVLLRKKWM SLTTLRKTYT SIALWAPASI MLSLVIVGEG QKTLVLVLVT 360
  361 LSVGVSSAAT IGSELNTIDL SPNHAGILAG LMSSFTNLMA LLTPLVVGVL VTDPSQRSQ