YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945785
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGAQGSREG HPGSNDGIST VIYSAEGEEL TINCEAESES SGQRDQWSRG VEFLFSCIAL  60
   61 SVGLGNVWRF PFIALENGGG AFLIPYVIVL LLIGRPVYYL EVIIGQFSSR GCIRAFDMAP 120
  121 IMRGIAYGQV YSTALATTYY ACIMALTIRY LVASFSEVLP WTYCLVEWGK SCVATGATAA 180
  181 NDSSIVQGVS SAELFFTQTV LREPESLDDN GLGTPSWDLV LCLLATWVII GTILSKGIRS 240
  241 SGKASYFLAL FPYVIMIVLL IRAVTLPGAW QGIVYFLKPQ WSQLLNPHVW YAAITQMFFS 300
  301 LAICFGTLVM YASFNDFNKN VHKDVIIITT IDSLTSILAG CIIFGILGNL AFETNTKDIS 360
  361 QVVKGGAGLA FISYPEAIAK FKYLPQLFAV LFFFMLLVLG IGSNIGMASA GGECG

Type	Start	End	Confidence
Cytoplasmic	1	50	0.97
Transmembrane Helix	51	72	0.88
Non-Cytoplasmic	73	80	0.76
Transmembrane Helix	81	99	0.92
Cytoplasmic	100	127	0.80
Transmembrane Helix	128	151	0.84
Non-Cytoplasmic	152	215	0.95
Transmembrane Helix	216	235	0.93
Cytoplasmic	236	245	0.80
Transmembrane Helix	246	266	0.93
Non-Cytoplasmic	267	289	0.88
Transmembrane Helix	290	314	0.88
Cytoplasmic	315	324	0.95
Transmembrane Helix	325	348	0.86
Non-Cytoplasmic	349	386	0.65
Transmembrane Helix	387	408	0.89
Cytoplasmic	409	415	0.51