YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQQKGKQG TKGAKQIVEE NKTTLTFYRN MAIGCAAPAL LLSFLVFEVT KTSVFMHILS  60
   61 LLILGSSYQF MAFMSQAKYS ESGALLDSGN DLNMEGGIAE NVKDLIILTS GTLLLALISN 120
  121 YFWLVLLLAP IRAGWMLWGS VIQPWLSQRN AQDDNPQVDE KKQKKMDRRM RRMS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.80
Transmembrane Helix	26	47	0.84
Non-Cytoplasmic	48	53	0.62
Transmembrane Helix	54	73	0.89
Cytoplasmic	74	110	0.65
Transmembrane Helix	111	136	0.74
Non-Cytoplasmic	137	174	0.65