YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944970
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALLFAVPF AIAFRVEELT ERFRENNETY NVTRPFCMNK NLSDDQLQSF RYTLVFVQYL  60
   61 VPFCVISFVY IQMAVRLWGT RAPGNAQDSR DITLLKNKKK VIKMLIIVVI ILGLCWLPLQ 120
  121 LYNILYVTIP EINDYHFISI VWFCCDWLAM SNSCYNPFIY GIYNEKFKRE FNKRFAACFC 180
  181 KFKTSMDAHE RTFSMHTRAS SIRSTYANSS MRIRSNLFGP ARGGVNNGKP GLHMPRVHGS 240
  241 GANSGIYNGS SGQNNNVNGQ HHQHQSVVTF AATPGVSAPG VGVAMPPWRR NNFKPLHPNV 300
  301 IECEDDVALM ELPSTTPPSE ELASGAGVQL ALLSRESSSC ICEQEFGSQT ECDGTCILSE 360
  361 VSRVHLPGSQ AKDKDAGKSL WQPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.85
Transmembrane Helix	56	80	0.76
Cytoplasmic	81	100	0.97
Transmembrane Helix	101	122	0.90
Non-Cytoplasmic	123	137	0.85
Transmembrane Helix	138	159	0.65
Cytoplasmic	160	384	0.67