YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944536
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNAQAGAQ SISDSLIAAA SAAADAGQSP TKLQEDSTGV LFECDVETTD GGLVKDITVM  60
   61 KKAEKRRLKL VWRNIIAFGY LHLAALYGAY LMVTSAKWQT CILAYFLYVI SGLGITAGAH 120
  121 RLWAHRSYKA KWPLRVILVI FNTIAFQDAA YHWARDHRVH HKYSETDADP HNATRGFFFS 180
  181 HVAGCCARST RR

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	91	0.94
Non-Cytoplasmic	92	101	0.79
Transmembrane Helix	102	124	0.91
Cytoplasmic	125	131	0.96
Transmembrane Helix	132	151	0.61
Non-Cytoplasmic	152	192	0.54