YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17944362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAETNKGPV LGMRHVQALL IFLNITTVFI GRLNVGVSVV AMTNAETTNP NFPEYDWTEA  60
   61 EKSYILSSFF WGYILTQFLG GYLCKRFGVK SVMFWGVFGS GVCSALTPLF IGFGEWQAYC 120
  121 GIRVLMGLAQ GVVFPCIHQH LAKWSPPEER NRLGALSHTG IECGNVSAMF LSGMIAKSSL 180
  181 GWPGISYVSA GVAFFWCTLW FVFAANHPTE SRFIGENELI YIESSLKHNE SYHATIIPIP 240
  241 WKAIWTSAPF LALLIVRCAE LGTEHSAGRD PILYERSPRH GHEEQCVLLG TPILGHVVHV 300
  301 VYLPSRSRCA LGQGLGVLDD FEKDLQLHCL LDSCCHFGGH WLFGQGTKEL RDCSDDHQCG 360
  361 RE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	42	0.84
Non-Cytoplasmic	43	62	0.94
Transmembrane Helix	63	84	0.90
Cytoplasmic	85	91	0.89
Transmembrane Helix	92	112	0.95
Non-Cytoplasmic	113	118	0.81
Transmembrane Helix	119	142	0.83
Cytoplasmic	143	153	0.92
Transmembrane Helix	154	176	0.71
Non-Cytoplasmic	177	183	0.62
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	362	0.75