YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17940740
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHREEDVNL GANKYSERQA IGTAAQSQDK DYIEPPPAPL FESGELMSWS FYRAGIAEFM  60
   61 ATFLFLYITV LTVMGVSKSD SKCSTVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLARKLSL TRALFYMVMQ CLGAICGAGV VKGFGKTLYQ TKGGGANVVA PGYTKGDGLG 180
  181 AEIVGTFVLV YTVFSATDAK RSARDSHVPL LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNQE HAWNDHWIFW VGPFIGAALA ALYHQVVIRA IPFKSK

Type	Start	End	Confidence
Cytoplasmic	1	50	0.89
Transmembrane Helix	51	74	0.83
Non-Cytoplasmic	75	90	0.80
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	132	0.72
Transmembrane Helix	133	155	0.88
Non-Cytoplasmic	156	177	0.88
Transmembrane Helix	178	197	0.87
Cytoplasmic	198	207	0.89
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	255	0.89
Transmembrane Helix	256	277	0.93
Cytoplasmic	278	286	0.90