YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCG2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNDHVLV PMSQRNKNGL PGMSSRGART LAEGDVLSFH HITYRVKVKS GFLVRKTAEK  60
   61 EILSDINGIM KPGLNAILGP TGGGKSSLLD VLAARKDPRG LSGDVLINGA PQPANFKCSS 120
  121 GYVVQDDVVM GTLTVRENLQ FSAALRLPKA MKTHEKNERI NTIIKELGLD KVADSKVGTQ 180
  181 FTRGISGGER KRTSIGMELI TDPSILFLDE PTTGLDSSTA NAVLLLLKRM SKQGRTIIFS 240
  241 IHQPRYSIFK LFDSLTLLAS GKLMFHGPAQ KALEYFASAG YHCEPYNNPA DFFLDVINGD 300
  301 SSAVMLNRGE QDHEANKTEE PSKREKPIIE NLAEFYINST IYGETKAELD QLPVAQKKKG 360
  361 SSAFREPVYV TSFCHQLRWI ARRSFKNLLG NPQASVAQLI VTVILGLIIG ALYFGLKNDP 420
  421 TGMQNRAGVF FFLTTNQCFT SVSAVELFVV EKKLFIHEYI SGYYRVSSYF FGKLVSDLLP 480
  481 MRFLPSVIYT CILYFMLGLK RTVEAFFIMM FTLIMVAYTA SSMALAIAAG QSVVSVATLL 540
  541 MTISFVFMML FSGLLVNLRT IGPWLSWLQY FSIPRYGFTA LQHNEFLGQE FCPGLNVTMN 600
  601 STCVNSYTIC TGNDYLINQG IDLSPWGLWR NHVALACMII IFLTIAYLKL LFLKKYS

Type	Start	End	Confidence
Non-Cytoplasmic	1	393	0.86
Transmembrane Helix	394	416	0.92
Cytoplasmic	417	427	0.79
Transmembrane Helix	428	450	0.65
Non-Cytoplasmic	451	477	0.71
Transmembrane Helix	478	498	0.88
Cytoplasmic	499	505	0.66
Transmembrane Helix	506	529	0.91
Non-Cytoplasmic	530	535	0.58
Transmembrane Helix	536	558	0.89
Cytoplasmic	559	564	0.57
Transmembrane Helix	565	579	0.33
Non-Cytoplasmic	580	631	0.59
Transmembrane Helix	632	653	0.90
Cytoplasmic	654	657	0.67