YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7576941
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILDSGGVT MPTENGGADL DTLRHRKPRS DSSNGLLPDS VTVSDADVRD RVDSAVEDTQ  60
   61 GKANLAGENE IRESGGEAGG NVDVRYTYRP SVPAHRRVRE SPLSSDAIFK QSHAGLFNLC 120
  121 VVVLVAVNSR LIIENLMKYG WLIRTDFWFS STSLRDWPLF MCCLSLSIFP LAAFTVEKLV 180
  181 LQKCISEPVV IILHIIITMT EVLYPVYVTL RCDSAFLSGV TLMLLTCIVW LKLVSYAHTN 240
  241 YDIRTLANSS DKANPEVSYY VSLKSLAYFM LAPTLCYQPS YPRSPCIRKG WVARQFAKLI 300
  301 IFTGFMGFII EQYINPIVRN SKHPLKGDLL YGVERVLKLS VPNLYVWLCM FYCFFHLWLN 360
  361 ILAELLCFGD REFYKDWWNA KSVGDYWRMW NMPVHKWMVR HVYFPCLRRN IPKVPAIILA 420
  421 FLVSAVFHEL CIAVPCRLFK LWAFLGIMFQ VPLVFITNYL QERFGSMVGN MIFWFTFCIF 480
  481 GQPMCVLLYY HDLMNRKGKM S

Type	Start	End	Confidence
Cytoplasmic	1	113	0.91
Transmembrane Helix	114	133	0.91
Non-Cytoplasmic	134	156	0.87
Transmembrane Helix	157	176	0.96
Cytoplasmic	177	187	0.73
Transmembrane Helix	188	208	0.88
Non-Cytoplasmic	209	214	0.78
Transmembrane Helix	215	234	0.95
Cytoplasmic	235	295	0.83
Transmembrane Helix	296	314	0.67
Non-Cytoplasmic	315	343	0.55
Transmembrane Helix	344	368	0.76
Cytoplasmic	369	437	0.46
Transmembrane Helix	438	460	0.78
Non-Cytoplasmic	461	470	0.66
Transmembrane Helix	471	491	0.95
Cytoplasmic	492	501	0.70