YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29367553, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRLSNSLL GILNAVTFLL SVPVLGGGIW LATRADGTEC ERYFSAPVIA FGVFLLLVSL  60
   61 AGLVGACCRV NCLLWFYLVA MFVLIVVLFC FTVFAFVVTN KGAGEAVSGR GYKEYRLGDY 120
  121 SNWLQKRMEN SKNWNRIRSC LQDSKVCKKL QDKNWDRTQF FKADLSPLES GCCKPPSSCN 180
  181 FLYVSGTNWT KVPTNSSDPD CNTWVDDGTQ LCYNCQSCKA GAVATLKRDW KRVAVVCIVF 240
  241 LVFIVIVYSL GCCAFRNNRR DNRGAYRGAA WKGGYA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.57
Transmembrane Helix	10	32	0.92
Non-Cytoplasmic	33	42	0.58
Transmembrane Helix	43	67	0.87
Cytoplasmic	68	73	0.53
Transmembrane Helix	74	98	0.91
Non-Cytoplasmic	99	232	0.61
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	276	0.59