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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|255678742, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPPFMAA AAFLTLVVVL FRAPAPAIAV GEEAAALLAF RRASVADDPD GALASWVLGA  60
   61 GGANSTAPCS WDGVSCAPPP DGRVAAVDLS GMSLAGELRL DALLALPALQ RLNLRGNAFY 120
  121 GNLSHAAPSP PCALVEVDIS SNALNGTLPP SFLAPCGVLR SVNLSRNGLA GGGFPFAPSL 180
  181 RSLDLSRNRL ADAGLLNYSF AGCHGVGYLN LSANLFAGRL PELAACSAVT TLDVSWNHMS 240
  241 GGLPPGLVAT APANLTYLNI AGNNFTGDVS GYDFGGCANL TVLDWSYNGL SSTRLPPGLI 300
  301 NCRRLETLEM SGNKLLSGAL PTFLVGFSSL RRLALAGNEF TGAIPVELGQ LCGRIVELDL 360
  361 SSNRLVGALP ASFAKCKSLE VLDLGGNQLA GDFVASVVST IASLRELRLS FNNITGVNPL 420
  421 PVLAAGCPLL EVIDLGSNEL DGEIMPDLCS SLPSLRKLLL PNNYLNGTVP PSLGDCANLE 480
  481 SIDLSFNLLV GKIPTEIIRL PKIVDLVMWA NGLSGEIPDV LCSNGTTLET LVISYNNFTG 540
  541 SIPRSITKCV NLIWVSLSGN RLTGSVPGGF GKLQKLAILQ LNKNLLSGHV PAELGSCNNL 600
  601 IWLDLNSNSF TGTIPPQLAG QAGLVPGGIV SGKQFAFLRN EAGNICPGAG VLFEFFGIRP 660
  661 ERLAEFPAVH LCPSTRIYTG TTVYTFTNNG SMIFLDLSYN GLTGTIPGSL GNMMYLQVLN 720
  721 LGHNELNGTI PDAFQNLKSI GALDLSNNQL SGGIPPGLGG LNFLADFDVS NNNLTGPIPS 780
  781 SGQLTTFPPS RYDNNNGLCG IPLPPCGHNP PWGGRPRGSP DGKRKVIGAS ILVGVALSVL 840
  841 ILLLLLVTLC KLRMNQKTEE VRTGYVESLP TSGTSSWKLS GVREPLSINV ATFEKPLRKL 900
  901 TFAHLLEATN GFSAETLIGS GGFGEVYKAK LKDGSVVAIK KLIHFTGQGD REFTAEMETI 960
  961 GKIKHRNLVP LLGYCKIGDE RLLVYEYMKH GSLDVVLHDK AKASVKLDWS ARKKIAIGSA1020
 1021 RGLAFLHHSC IPHIIHRDMK SSNVLLDNNL DARVSDFGMA RLMNALDTHL SVSTLAGTPG1080
 1081 YVPPEYYQSF RCTTKGDVYS YGVVLLELLS GKKPIDPTEF GDNNLVGWVK QMVKENRSSE1140
 1141 IFDPTLTDRK SGEAELYQYL KIACECLDDR PNRRPTMIQV MAMFKELQLD SDSDILDGFS1200
 1201 INSSTIDESG EKSM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle