YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13991929
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.45
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.44
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	104	0.51
Transmembrane Helix	105	125	0.62
Cytoplasmic	126	136	0.37
Transmembrane Helix	137	159	0.87
Non-Cytoplasmic	160	164	0.39
Transmembrane Helix	165	188	0.76
Cytoplasmic	189	207	0.38
Transmembrane Helix	208	242	0.71
Non-Cytoplasmic	243	244	0.37
Transmembrane Helix	245	262	0.56
Cytoplasmic	263	282	0.61
Transmembrane Helix	283	303	0.92
Non-Cytoplasmic	304	376	0.71
Transmembrane Helix	377	398	0.83
Cytoplasmic	399	408	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSAAAVGLL RPCGATTAAA PLQLRNPSPR GFGVGVGQPL LPPRGLRLSA VAPRAGISAR  60
   61 RIGLVPASPE QEDERRRGAR DVAVAATAAA AGEAGAEEGG GLAKTLQLGA LFGLWYLFNI 120
  121 YFNIYNKQVL KVFPYPINIT NVQFAVGTVI ALFMWITGIL KRPKISGAQL AAILPLAMVH 180
  181 TMGNLFTNMS LGKVAVSFTH TIKAMEPFFS VLLSALFLGE MPTPFVVLSL VPIVGGVALA 240
  241 SLTEASFNWA GFWSAMASNV TFQSRNVLSK KLMVKKEESL DNITLFSIIT VMSFFLLAPV 300
  301 TLLTEGVKVT PTVLQSAGLN LKQIYTRSLI AAFCFHAYQQ VSYMILARVS PVTHSVGNCV 360
  361 KRVVVIVTSV LFFRTPVSPI NSLGTGVALA GVFLYSQLKR LKPKPKTA