YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7547401
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGKKIRIG FDGFGRINRF ITRGAAQRND SKLPSRNDAL KHGLDGLGSA GSKSFRALAA  60
   61 IGAGVSGLLS FATIAYSDEA EHGLECPSYP WPHEGILSSY DHASIRRGHQ VYQQVCASCH 120
  121 SMSLISYRDL VGVAYTEEET KAMAAEIEVV DGPNDEGEMF TRPGKLSDRF PQPYANEAAA 180
  181 RFANGGAYPP DLSLITKARH NGQNYVFALL TGYRDPPAGV SIREGLHYNP YFPGGAIAMP 240
  241 KMLNDGAVEY EDGIPATEAQ MGKDVVSFLS WAAEPEMEER KLMGFKWIFV LSLALLQAAY 300
  301 YRRLRWSVLK SRKLVLDVVN

Type	Start	End	Confidence
Cytoplasmic	1	56	0.51
Transmembrane Helix	57	75	0.44
Non-Cytoplasmic	76	282	0.79
Transmembrane Helix	283	304	0.69
Cytoplasmic	305	320	0.59