YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115468794, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSAAAAPN GGAAAAEQQQ RRRLPDFQQS VRLKYVKLGY HYLISHGMYL LLSPLMALVA  60
   61 VQLSTVSPGD IADLWEQLRF NLLSVVACST LLVFLSTLYF LTRPRPVYLL DFACYKPDPQ 120
  121 RKCTRETFMR CSSLTGSFTD ANLDFQRKIL ERSGLGEDTY LPPAVLRVPP NPCMDEARKE 180
  181 ARTVMFGAID QLLEKTGVKP KDIGVVVVNC SLFNPTPSLS AMVVNHYKLR GNVISYNLGG 240
  241 MGCSAGLLSV DLAKDLLQVH PNSYALVVSM ENITLNWYFG NNRSMLVSNC LFRMGGAAIL 300
  301 LSNRRSDRRR SKYELVHTVR THKGANDKCF GCVTQEEDEI GKIGVSLSKD LMAVAGDALK 360
  361 TNITTLGPLV LPLSEQLLFM ATLVAKKVLK MKIKPYIPDF KLAFEHFCIH AGGRAVLDEL 420
  421 EKNLELTDWH MEPSRMTLYR FGNTSSSSLW YELAYTEAKG RIRKRDRIWQ IAFGSGFKCN 480
  481 SAVWKALQTV NPAKEKNPWM DEIDNFPVEV PKISKVGNA

Type	Start	End	Confidence
Cytoplasmic	1	41	0.88
Transmembrane Helix	42	63	0.88
Non-Cytoplasmic	64	79	0.81
Transmembrane Helix	80	101	0.93
Cytoplasmic	102	232	0.89
Transmembrane Helix	233	253	0.61
Non-Cytoplasmic	254	284	0.72
Transmembrane Helix	285	302	0.67
Cytoplasmic	303	519	0.72