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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28394155
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVPSVTAAP ESVALVGMSC RLPGASGVEE FWDLLTEGRD AVARQPDGSW RAALAETGTF  60
   61 DAGFFGMSPR QAAAADPQQR LVLELGWEAL EHAGVVPATL AGSRTGVFVG VTADDYATSL 120
  121 WRTGTTPDGY TVPGLNRSMI ANRLSYLLEL RGPSFVVDSA QSSSLVAVHL ACESLLRGES 180
  181 DAAIVAGVSL ISTPESTAAM ASLGALSPDG RCYTFDARAN GYVRGEGGAA VVLKRLSDAL 240
  241 VDGDRVHAVI LGGAVNNDGG GPGLLAPDRA AQEEVLRRAY DRSGVGPAQV TYVELHGTGT 300
  301 PVGDPVEAAA LGAVFGADRR ADDPLHVGSV KSNIGHLEGA AGITGLLKAV LCVREGVLPP 360
  361 TLNHQTPNPG IPLAQLRLRV QTTVQRWPDR ADEGRRIAAV SSFGMGGTNA HLVLAQAPER 420
  421 AVRPAVSPTT ELPAVPWVLS ARSEAALRGQ AERLREHLDR HPDLRPLDVG FSLATSRDVF 480
  481 PHRSVRFADG EPVAAGSGRL AEGRVAWVFP GQGAQWTGMA AASLTESPVF AARLTECAAA 540
  541 VTPFVDWSLL DVLRAVPGSP RLDRDDVVQP ACFAVMVSLA ELWRSWGVVP EAVVGHSQGE 600
  601 IAAAVVAGAI SLEDGARIVA LRSQLLTREL HGLGGMVSVG LPVAETERLL TRWSGRLHLA 660
  661 VVNGPNATVV AGDGDALDEL VTECERRQAR VRRVAVEYAS HSPHVERIRD ELMTALRPVT 720
  721 PQPSAVAFYS TADVGITDGE RLDAGYWYRN LRQPVRFADT LRQMSTDGYT SFVELSAHPM 780
  781 LVTALEEILA QETTAALCVT GSLRRDEGGL GRMLASAAEG WAHGLPVDWR KVFAGTGAER 840
  841 VELPTYAFQR QRYWAPDAER TAVPPAAVDA PVRPAASPPE QATPAQATTQ QTYDLLRTVL 900
  901 ETVATVQGLP SAETVDPDLT FKEQGLESYA AVEFRNRLRA RVGLSLPATL VYDFPTPTAV 960
  961 AGFLGDQLHP RESQLVTVTP ALVDDEPIAI VGMGCRFPGG VSSPEDLWDV VASGVDAVSP1020
 1021 FPVDRGWDLE SLFDGDPDRA GTTYCREGGF LDDAAGFDAG FFGVSPREAV AMDPQQRLLL1080
 1081 EGVVEGVGAG GFSSAGVRGS RTGVYAGVMN QEYGPRLYES AEEHRGYLLT GTAASVVSGR1140
 1141 VSYVLGLEGP AVTVDTACSS SLVALHLAVQ ALRSGECDVA LAGGVTVMAT PGIFVEFSRQ1200
 1201 GGLAVDGRCK AYSDSADGTG WSEGVGVVVV QRLSDAVAAG RRVLAVVRGS AVNQDGASNG1260
 1261 LTAPSGSSQQ RVIRAALASA RLSVGDVDVV EGHGTGTRLD PIEAQALLAT YGRRGGGRSL1320
 1321 LLGSVKSNIG HAQAAAGVAG VVKMVLAMER GVVPASLHVR CAVFACQDWS SGAVEVVGEA1380
 1381 CAWPETGRPR RAAVSSFGVS GTNAHVILEQ APPVVPDASS SAGAPVSAVS DADSSSVSVP1440
 1441 WVLSARSEWG LRASAGRLEA ALSGPLSGSG SGSGVVSGVD VGWSLGGRSV FGWRGVSLSG1500
 1501 VGRLGVLAGG GVGSGVVVGS GRVASGGVVF VFPGQGAQWV GMARGLLGES GVFSEAFDEV1560
 1561 GGVVQGLVDW PVRGTACREV GRGDLGRVDV VQPLSFVVMV ALARLSRSSG VVPPGWVGHS1620
 1621 QGEIAAAVVS GALSVEEGAR VVVGRSRVIG ARLAGGGAMV WVGASVGVVE GLLGGLGGGL1680
 1681 EVAVVNGPGQ VVVAGDGGWG GGVVGAGVGG WGVRARLLPV GYGSHCGLVD VVRDELLGVL1740
 1741 GEVRGGSSVI PFYSSVDVGV VDGGVLDGGY WFRNLRLRVR FGEVVRRLVG DGFSSFVEVS1800
 1801 AHPVLVGAIE DVLGEVGGGV GFVCGGFVAV GVDGGLGRMV VSAAEGWVRG LPVQWRRVPV1860
 1861 LAGGRQVGLP TYPFQHDRYW LAPAPRTAVA AGATAADGAA AGVGWRYRVG WKALPVPTPG1920
 1921 RLHGRWLVVH GHATGGVDQL SGVVADILTR HGATTEHLTI DPAEPGVLAE RLGALAAAGE1980
 1981 PVRGVVSLLD LDGTLLLVQA MGRAGLDARI RAVTTGAVAV SSDEVPSSEG AALWAFGRVA2040
 2041 ALELPDRWAG LIDLPVQADA RALERLAGAL TSEEENQLAV RASGLYTRRI IRTAGRARKE2100
 2101 WRPRGTVLVT GGTGALGARV ARWLADHGAE HLVLVSRRGA QATGAAELVA GLERTGVRVT2160
 2161 VAACDVADRD GAGRPAGGAP TAGGLPHRWR ARRPDGGPAH SRGSGCGVPA ERLAATHLHD2220
 2221 LTAHRDLDAF VLFSSIVGSW GNAGQAAYAA ANAALDALAE QRRSAGLPAT SIAWGLWAGA2280
 2281 GMADGAGEQT FTRRGVRAMD PDDGIAALRQ ALDSGDTCVT VADVDWPSMV RTHANPAAAR2340
 2341 LFEEIPEARQ ALADRAAEQS AERPSDLARR LTGLTAADRR RLLLDLIGAQ AAVILRQDSG2400
 2401 WTIPPDSAFR ASGFDSLTAL ELRNRLNAAT GLTLPSTVVF DHPSPVALAD FLLDAVLPRS2460
 2461 GGADGVVEVA AAPDEPIAVI GVGCRYPGGV ATPEQLWDLL LTERDAIGPL PTDRGWNIDD2520
 2521 IFDPEPGRVG RTYCREGGFL HDAADFDAAF FGISPREALA MDPQQRLILE TSWEALERAG2580
 2581 IDPRSLRGSR TGVYTGMTHQ EYAARLHEMP EEYEGHLLTG TSGSVASGRV SYVLGLEGPA2640
 2641 VTVDTACSSS LVAIHLAVQA LRAGECDLAL AGGVTVMATR DCSWSSPASG ASPRRPVQGV2700
 2701 LRQADGTGWS EGAGVITLAR LSDAVRDGRH ILALIRGPRS TRTVPATGSP RRTGRHSSAS2760
 2761 SRLALANAGL TPPEVDAVEA HGTGTRLGDP IEAGALLATY GQGRPVDQPV RLGTLKSNIG2820
 2821 HTQAAAGVAG MIKMVLALRH GVLPATLHAT EPSPHIDWNA GAVSLLTERT DWPDNPRPRR2880
 2881 AAVSAFGISG TNAHIILEQA PEPTVPSERS ERAAGPRLSV VPWPLSGRSE PALRAQAARL2940
 2941 RDFLDDGADP VDVGFSLATT RSRLDHRAVV LLDGETAPTE ALHALVSGDA GRAVLSGTPR3000
 3001 DTALAFLFTG QGSQRLGMAD GIRREFPPFA EALAEIAAEM DTRLDQPLLS VMFAEPGSAT3060
 3061 ATLIDRTEYA QPALFAVEVA LFRLFESWGV RPDVLLGHSV GEIAAAHVAG VMDLEHACRL3120
 3121 VAARGRLMQR MPADGAMIAI RLPEERVREQ LHDLGRHVSV AAVNGPESVV VSGAGHVVRS3180
 3181 LADQLTAEGH RVRRLNVSHA FHSPHVDEVL EEFRKAAAEV RYGRPLVPVV SNVTGRVATE3240
 3241 DELGSAEYWV RHLREPVRFH DGIRTLLDRG ATTLVELGPD GVLCGLAAQC LDPDRDEVAL3300
 3301 VPALHRTSGE VRSLVAAAAT VHVRGHDVDW NGFFAETGAR RVDLPTYAFQ RQRYWASVSP3360
 3361 PGSDQTAAVR FGLNAADHPL LGGALSVAGS EDLIFTGRLS LAAQPWIAGH RVGERAAARY3420
 3421 AFLEVASRAG RAVGGDRVRD LQIEAPLVVP DRGAVQVQVV LTGGDEPDGR QVRVFARPEG3480
 3481 STAPWTRHAT GNGDAAGGSG RRPGVGALVA PEGAVPLDVG DLYRRFAAQH LEYDGVFTGV3540
 3541 RELWRRADEV FAEVRLPDGA EVEAAAFGVH PALLDAALQP WLAGDFVSRP ADSVHLPFAW3600
 3601 QGMQVHTSGA AALRVRIRRA GESAVSMQAV AVDGAPVCSL DALVLRPTTV RSLRRTVGPA3660
 3661 LLPLHHLRWR EREPGQAPGT PLTFLGPTGA ERYVGEAVTV HQDLTALRAV GQRGAPPPRA3720
 3721 VLAAFGSPHR TAEAVRAVAA AALDLVQRWL ADDRHQDSRL VLVTERAVAA DDHEDVPDLA3780
 3781 GAAVWGLVRS AQSEHPGRFA LIDHDGTEQS RALLPAAVAL GCAQLALRQG TVRVPALAAL3840
 3841 PPTESGADTR LAPDGTVLVT GAAGALGALV VRHLVAEHGV RRLLLLSRHG REAAGMAELA3900
 3901 EDLAQRGVTV TVLACDVADR TGLAAALDAV PDEHPLTAVV HAAGVLDDAM VTGLTADRLD3960
 3961 EVLRPKVDAA LHLHELTADR KLAAFVLFSA AAGLLGNPGQ ASYAAANTVL DALAHHRRAN4020
 4021 GLPATSLAWG VLGGPNGMAA NLNAAHLRRL ARYGIAPLDG DEARSLLDRA LRTDRALLVP4080
 4081 LRLTRVDARQ DPADVPEILR PLVVPVVADG GGRSPATGPN SLEAFRAQLA ELDDGTRGEH4140
 4141 LLDLVRRQVA EVLGHDRADV VDPKRPFQDL GFDSLLAVEL RNRLQAATGL PLPATLGFDH4200
 4201 PTPQTVVDHL AESLLSRPEG DPGEQALTGL DAVARALTKL GDEDIRRVVV RRRLAELLAT4260
 4261 VAGAEPDLAN GGGTGAGVDD GHDDTALVER LSGASDEDLL AFIDEQI

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