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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19071972
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEAFLRRR FSLCPPASTP QKTDPRKVPR NLLLGCENEL GPITPGRDME SNGPSQPRDE  60
   61 EPQTPGSATK VPLAEYRLCN GSDKECTSPT TRVSKKDALK AQKENYRQEK KRATKQLFSA 120
  121 LTDPSVVIMA DSLKIRGTLK SWTKLWCVLK PGVLLIYKTP KVGQWVGTVL LHCCELIERP 180
  181 SKKDGFCFKL FHPLDQSVWA VKGPKGESVG SITQPLPSSY LIFRAASESD GRCWLDALEL 240
  241 ALRCSSLLRL STCKQGRDGE QGSSPDASPS SLYGLPTSAT IPDQDLFPLN GSALENDAFS 300
  301 DKSERENAED SNAETQDHSR KTNESGSDLL DSPGGPWRGT TYVEQVQEEL GELDETSQVE 360
  361 TVSEENKSLM WVLLRQLRPG MDLSRVVLPT FVLEPRSFLG KLSDYYYHGD LLSRAAAEDD 420
  421 PYCRMKLVLR WYLSGFYKKP KGIKKPYNPI LGETFRCRWL HPQTNSHTFY IAEQVSHHPP 480
  481 VSAFYVSNRK DGFCMSGSIT AKSKFYGNSL SALLDGKAKL TFLNRKEEYT LTMPYAHCRG 540
  541 ILYGTMTMEL GGKVNIECEK NNLQAELDFK LKPFFGSSAN INQISGKIMS GEEVLARLTG 600
  601 HWDRDVFIKE ESSGGTELFW TPSEEVRRQR LKRHTVLLEE QSELESERLW QHVTRAIREG 660
  661 DQHKATQEKS VLEEAQRQRA REHQQSLTPW KPQLFLLDPL TQEWRYRYED LSPWDPLKDI 720
  721 AQYEQDGILH TLQRETMSGQ TTFLGSPDSR HKRPSSDRRL RKASDQPSGH SQVTESSGST 780
  781 PESCPDLSDE DFVPGGESPC PRCRREVHRL KMLQEAVLSI QEAQQELHRH LSTMLSSTVR 840
  841 AGQAPAPSLL QNPRSWFLLC IFLTCQLFIN YILK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle