YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6598336, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRSRCRRS LLWFLVFHGG ATATGAPSGG KELSQTPTWA VAVVCTFLIL ISHLLEKGLQ  60
   61 RLANVCFLLL LLLFLRVFLF KHSLSETYEF VSSQWLWKKH KNSLLEALEK IKAELMILGF 120
  121 ISLLLTFGEP YILKICVPRK AALSMLPCLS EDTVLFQKLA PSSLSRHLLA AGDTSINCKQ 180
  181 GSEPLITLKG LHQLHILLFF LAIFHIVYSL ITMMLSRLKI RGWKKWEQET LSNDYEFSID 240
  241 HSRLRLTHET SFVREHTSFW TTTPFFFYVG CFFRQFFVSV ERTDYLTLRH GFISAHLAPG 300
  301 RKFNFQRYIK RSLEDDFKLV VGISPVLWAS FVIFLLFNVN GWRTLFWASI PPLLIILAVG 360
  361 TKLQAIMATM ALEIVETHAV VQGMPLVQGS DRYFWFDCPQ LLLHLIHFAL FQNAFQITHF 420
  421 FWIWYSFGLK SCFHKDFNLV VSKLFLCLGA LILCSYITLP LYALVTQMMK WCVEQMGSHM 480
  481 KKAVFDEQMA KALKKWHKDI KLKKGKARKL PSKTLGVSES FSLSSSSSAT TLHRSKTTGH 540
  541 SSNIIYYKQE DEEDEMSDLE AGAEDAIDRI QQQEMQFHNS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	29	0.88
Non-Cytoplasmic	30	35	0.85
Transmembrane Helix	36	55	0.92
Cytoplasmic	56	61	0.89
Transmembrane Helix	62	80	0.91
Non-Cytoplasmic	81	193	0.75
Transmembrane Helix	194	216	0.89
Cytoplasmic	217	316	0.70
Transmembrane Helix	317	337	0.92
Non-Cytoplasmic	338	344	0.69
Transmembrane Helix	345	366	0.81
Cytoplasmic	367	400	0.73
Transmembrane Helix	401	423	0.83
Non-Cytoplasmic	424	440	0.69
Transmembrane Helix	441	465	0.85
Cytoplasmic	466	580	0.74