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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27877113
Protein type: Globular with Signal Peptide
Type Confidence: 0.24
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIMIGSMA ISVPNTHISC ASNSVMPVQA VQVAKQVPSA RGVLYTLKRE GNTQVHKHEE  60
   61 ALRKFQEAFD QDAGIQRRLL VNKHSSIQST KKNGLTLRHL TLEQARAKEA AIARRKQEEE 120
  121 DFLNGKYEQQ FYAGVSTTKS MKSEGGSVGF RTKYWRPTPK KTKERRATSQ RTKPTYVLEE 180
  181 VLSIASKSGK LVEFITGGKG KRVKVCYVRK HGAVLPKFSL PHEEGKYIHQ ELQYASIYES 240
  241 LPYICMYAKY KSISADDITY GDSGLLFDER SSLTTNHTKL PYFVVRGRKN EKLVNALEVV 300
  301 ENMEDIQHYS QNPEAQFFRG WKKVFDKMPP HVENHECTID FTNEQCGELA AAISQSIFPV 360
  361 KKLSCKQCRQ HIKNLSWEEY KQFLLAHMGC HGTEWETFQE IDGMRYVKKV IETSTAENAS 420
  421 LQTSLEIVRL TQNYKSTHML QIQDINKALM KGPSVTQSEL EQASKQLLAM TQWWKNHMAL 480
  481 TDEDALKAFR NKRSSKALLN PSLLCDNQLD KNGNFVWGER GRHSKRFFAN YFEEVVPSEG 540
  541 YSKYVIRKNP NGQRELAIGS LIVPLDFERA RMALQGKSVT REPITMSCIS RQDGNFVYPC 600
  601 CCVTHDDGKA FYSELKSPTK RHLVIGTSGD PKYIDLPATD ADRMYIAKEG FCYLNIFLAM 660
  661 LVNVNEDEAK DFTKMVRDVI VPRLGKWPTM LDVATAAYML TVFHPETRNA ELPRILVDHA 720
  721 CQTMHVIDSF GSLTVGYHVL KAGTVNQLIQ FASNDLQSEM KFYRVGGEVQ QRMKCETALI 780
  781 TSIFKPKRMV QILENDPYIL LMGLVSPSIL IHMYRMKHFE KGVELWISKE HSVAKIFIIL 840
  841 EQLTKRVAAN DVLLEQLEMI SETSERFMSI LEDCPQAPHS YKTAKDLLTM YIERKASNNQ 900
  901 LVENGFVDMN DKLYMAYEKI YSDRLKQEWR ALSWLEKFSI TWQLKRFTPH TEKCLTKKAV 960
  961 EENSASSGNF ASVCFMNAQS HLRNVRNTLF QKCDQVWTAS VRAFVRFIIS TLHRCYSDIV1020
 1021 YLVNICIIFS LLVQMTSVLQ GIINTARRDK ALLHSHKRRE DEEAVIHLYE MCEKMEGGHP1080
 1081 SVEGFLHHVR GVRPDLLSVA KNMTGQSEDV SAQVKTATQL QLEKIVAFMA LLTMCIDNER1140
 1141 SDAVFKVLSK LKAFFSTMGE DVKVQSLDEI QNIDEDKKLT IDFDLETNKE SSSVSFDVKF1200
 1201 EDWWNRQLQQ NRVIPHYRST GEFLEFTRET AAKIANLVAT SSHTEFLIRG AVGSGKSTGL1260
 1261 PHHLSKKGKV LLLEPTRPLA ENVSKQLSLE PFYHNVTLRM RGLSKFGSSN IVVMTSGFAF1320
 1321 HYYVNNPQQL SDFDFIIIDE CHVQDSPTIA FNCALKEFEF NGKLLKVSAT PPGRECEFTT1380
 1381 QQPVKLKVED HLSFQNFVQA QGTGSNADMI QHGNNLLVYV ASYNEVDQLS RLLTEKHYKV1440
 1441 TKVDGRTMQM GNVEIATTGT EGKPHFIVAT NIIENGVTLD IDCVIDFGLK VVATLDTDNR1500
 1501 CVRYNKQSVS YGERIQRLGR VGRCKPGFAL RVGHTGKGIE EVPEFIATEA AFLSFAYGLP1560
 1561 VTAQSVSTNI LSRCTVKQAR VALNFELTPF FTTNFIKYDG SMHPEIHRLL KPYKLRESEM1620
 1621 LLTKLAIPYQ FVGQWITVKE YERQGVHLNC PEKVKIPFYV HGIPDKLYEM LWDIVCKYKN1680
 1681 DAGFGPIKSV NATKISYTLS TDPTAVPRTL AILDHLLSEE MTKKSHFDTI GSSVTGYSFS1740
 1741 LAGIADGFRK RYLRDYTQHN IAILQQAKAQ LLEFDCNKVD INNLHNVEGI GILNAVQLQS1800
 1801 KHEVSKFLQL KGKWDGKKFM NDAVVAIFTL VGGGWMLWDY FTRVIREPVS TQGKKRQIQK1860
 1861 LKFRDAFDRK VGREVYADDY TMEHTFGEAY TKKGKQKGST RTKGMGRKSR NFIHLYGVEP1920
 1921 ENYSMIRFVD PLTGHTMDEH PRVDIRMVQQ EFEEIRKDMI GEGELDRQRV YHNPGLQAYF1980
 1981 IGKNTEEALK VDLTPHRPTL LCQNSNAIAG FPEREDELRQ TGLPQVVSKS DVPRAKERVE2040
 2041 MESKSVYKGL RDYSGISTLI CQLTNSSDGH KETMFGVGYG SFIITNGHLF RRNNGMLTVK2100
 2101 TWHGEFVIHN TTQLKIHFIQ GKDVILIRMP KDFPPFGKRN LFRQPKREER VCMVGTNFQE2160
 2161 KSLRATVSES SMILPEGKGS FWIHWITTQD GFCGLPLVSV NDGHIVGIHG LTSNDSEKNF2220
 2221 FVPLTDGFEK EYLENADNLS WDKHWFWEPS KIAWGSLNLV EEQPKEEFKI SKLVSDLFGN2280
 2281 TVTVQGKKER WVLDAMEGNL VACGQADSAL VTKHVVKGKC PYFAQYLSVN QEAKSFFESL2340
 2341 MGAYQPSRLN KDAFKRDFFK YNKPVVLNEV DFQAFEKAVA GVKLMMMEFD FKECVYVTDP2400
 2401 DEIYDSLNMK AAVGAQYKGK KQDYFSGMDS FDKERLLYLS CERLFYGEKG VWNGSLKAEL2460
 2461 RPIEKVQANK TRTFTAAPID TLLGAKVCVD DFNNQFYSLN LTCPWTVGMT KFYRGWDKLM2520
 2521 RSLPDGWVYC HADGSQFDSS LTPLLLNAVL DVRSFFMEDW WVGREMLENL YAEIVYTPIL2580
 2581 APDGTIFKKF RGNNSGQPST VVDNTLMVVI AMYYSCCKQG WSEEDIQERL VFFANGDDII2640
 2641 LAVSEKDTWL YDTLSTSFAE LGLNYNFEER TKRREELWFM SHQAMLVDGI YIPKLEPERI2700
 2701 VSILEWDRSK ELMHRTEAIC AAMIEAWGYT ELLQEIRKFY LWLLNKDEFK ELASSGKAPY2760
 2761 IAETALRKLY TDVNAQTSEL QRYLEVLDFK HTDDCCESVS LQSGKEKEGD MDAGKDPKKN2820
 2821 TSSSKGAGTS SKDVNVGSKG KVVPRLQKIT RKMNLPMVEG KIILSLDHLL EYKPNQVDLF2880
 2881 NTRATRTQFE AWYNAVKDEY ELDDEQMGVV MNGFMVWCID NGTSPDANGV WVMMDGEEQI2940
 2941 EYPLKPIVEN AKPTLRQIMH HFSDAAEAYI EMRNSESPYM PRYGLLRNLR DRELARYAFD3000
 3001 FYEVTSKTPN RAREAIAQMK AAALSGVNNK LFGLDGNIST NSENTERHTA RDVNQNMHTL3060
 3061 LGMGPPQ

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