YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277423, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.51
Transmembrane Helix	51	71	0.69
Cytoplasmic	72	78	0.69
Transmembrane Helix	79	99	0.93
Non-Cytoplasmic	100	106	0.61
Transmembrane Helix	107	126	0.92
Cytoplasmic	127	138	0.66
Transmembrane Helix	139	161	0.88
Non-Cytoplasmic	162	169	0.67
Transmembrane Helix	170	191	0.89
Cytoplasmic	192	255	0.79
Transmembrane Helix	256	277	0.70
Non-Cytoplasmic	278	292	0.81
Transmembrane Helix	293	314	0.90
Cytoplasmic	315	322	0.86
Transmembrane Helix	323	345	0.87
Non-Cytoplasmic	346	355	0.85
Transmembrane Helix	356	379	0.86
Cytoplasmic	380	394	0.81
Transmembrane Helix	395	417	0.84
Non-Cytoplasmic	418	424	0.72
Transmembrane Helix	425	444	0.93
Cytoplasmic	445	519	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFVSMAGW MFGADTRSIG GVTSMRDFRE RYADRYDPIT DQYSLSSARQ GLLTGMVNVG  60
   61 SLFGCIISSP IADRFGKRLS IIGFCAVYII GIIVQVTAVP SWVQIMVAKI WTGIGIGALS 120
  121 VLAPGYQSET APPSIRGTVV VTYQLFVTGG IFIAACINMG THKLHKTAQW RVSIGINLLW 180
  181 GIITMIGILF LPESPRYLIQ VGKDEEAVRV LSESAELFPD SEEVQNEYHR LKSSIDEEFA 240
  241 GGPCSWASIF GKDIRYRTFL GMFVMSLQQL TGNNYFFYYG FSVMQGAGIN SPYLSAMILD 300
  301 AVNFGCTFGG MYVLERFGRR NPLIIGGIWQ SICFFIYSAV GSRALYHKNG TSNTRAGAVM 360
  361 IVMACLFIFG FAQTWAPAAY VIVGESYPVR YRSKCAAVAT ASNWLWNFLI SFFTPFIQAS 420
  421 IGFKYGYVFA SCNLTGAIVI FLFAKETKGL TLEEINELYM SVIKPWESGN FKLNYSEQKK 480
  481 VEKEKSRKGG ARGESVEYVE RASNTDSSPQ YSSHEEDYA