YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222622995, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYCLAAPPA AAAPAAPAAR RASSFLFVVS VPPPTLWGRV TGGAVSAQRL VRRRCSSAGE  60
   61 PRAAGDGGLS SFCIIEGPET IQDFVQMQSQ EIQDNIRSRR NKIFLLMEEV RRLRVQQRIR 120
  121 TSESRGASSE ESEMPEIPSS IPFLPNTSPK TMKQLYLTSF SFITGIIFFG GLIAPVLELK 180
  181 LGLGGTSYED FIRTMHLPLQ LSQVDPIVAS FSGGAVGVIS ALMLVEIRNV RQQEKKRCTY 240
  241 CHGTGYLPCA RCSASGMLLN SKSFSLSCDN GHNMWSTTER CPNCSGAGKV MCPTCLCTGT 300
  301 AMASEHDPRI DPFD

Type	Start	End	Confidence
Cytoplasmic	1	154	0.84
Transmembrane Helix	155	177	0.86
Non-Cytoplasmic	178	206	0.85
Transmembrane Helix	207	227	0.91
Cytoplasmic	228	314	0.87