YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50252660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	59	0.87
Non-Cytoplasmic	60	63	0.84
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	115	0.95
Transmembrane Helix	116	135	0.92
Non-Cytoplasmic	136	154	0.87
Transmembrane Helix	155	179	0.91
Cytoplasmic	180	198	0.95
Transmembrane Helix	199	224	0.91
Non-Cytoplasmic	225	242	0.89
Transmembrane Helix	243	266	0.84
Cytoplasmic	267	318	0.95
Transmembrane Helix	319	337	0.39
Non-Cytoplasmic	338	344	0.38
Transmembrane Helix	345	367	0.77
Cytoplasmic	368	388	0.54
Transmembrane Helix	389	410	0.91
Non-Cytoplasmic	411	416	0.54
Transmembrane Helix	417	438	0.94
Cytoplasmic	439	449	0.52
Transmembrane Helix	450	471	0.51
Non-Cytoplasmic	472	475	0.45
Transmembrane Helix	476	496	0.88
Cytoplasmic	497	506	0.52
Transmembrane Helix	507	529	0.89
Non-Cytoplasmic	530	572	0.59
Transmembrane Helix	573	591	0.88
Cytoplasmic	592	606	0.51
Transmembrane Helix	607	631	0.82
Non-Cytoplasmic	632	679	0.58
Transmembrane Helix	680	701	0.88
Cytoplasmic	702	708	0.54
Transmembrane Helix	709	732	0.87
Non-Cytoplasmic	733	778	0.58
Transmembrane Helix	779	798	0.67
Cytoplasmic	799	799	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEADMENGR LYPERPRTFS TVRTKSSLPP IFRVLMRINP RAFIVLLLLV FSGVLYVGAS  60
   61 TSPIVLFVFC ICTLSLFFSL YLTKWVLAKD EGPPEMSEIS DAIRDGAEGF FRTQYGTISK 120
  121 MACILALVIL GIYLFRSTTP QQEASGVGRT TSAYITVASF LLGALCSGIA GFVGMWVSVR 180
  181 ANVRVSSAAR RSAREALQIA VRAGGFSAIV VVGMAVFGVA ILYATFYVWL EVDSPGSMKV 240
  241 TDLPLLLVGY GFGASFVALF AQLGGGIYTK AADVGADLVG KVEQGIPEDD PRNPAVIADL 300
  301 VGDNVGDCAA RGADLFESIA AEIISAMILG GTMAQRCKIE DPSGFILFPL VVHSFDLVIS 360
  361 SVGILSIRGT RDSGLISPIE DPMAIMQKGY SITILLAVVT FGVSTRWLLY TEQAPSAWLN 420
  421 FALCGLVGII TAYAFVWISK YYTDYKHEPV RLLALSSSTG HGTNIIAGVS LGLESTALPV 480
  481 LVISVAIISA FWLGHTSGLV DESGNPTGGL FGTAVATMGM LSTAAYVLTM DMFGPIADNA 540
  541 GGIVEMSQQP ESVREITDIL DAVGNTTKAT TKGFAIGSAA LASFLLFSAY MDEVAAFAQL 600
  601 PFKEVDIAIP EVFVGGLLGS MLIFLFSAWA CSAVGRTAQE VVNEVRRQFI ERPGIMDYNE 660
  661 KPDYGRCVAI VASASLREMI RPGALAIISP MAVGIIFRML GHATGRPLLG AKVVAAMLMF 720
  721 ATVSGILMAL FLNTAGGAWD NAKKYIETGA LGGKGSESHK AAVTGDTVGD PFKDTAGPSI 780
  781 HVLIKMLATI TLVMAPIFL