YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50251979
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVVRTHIG HMLKMIHFCS MFLITFSDYK IQAILSSQQK RKAPEESDVA ESSDCMITSP  60
   61 GFAVSPMLTP VSGKAVKTSK SKTKNNKAGP QTPTSNVGSP LNPPTPVGTC RYDSSLGLLT 120
  121 KKFINLLKQA PDGILDLNNA AETLEVQKRR IYDITNVLEG IGLIEKTLKN RIRWKGLDDS 180
  181 GVELDNGLSA LQAEVENLSL KEQALDERIS DMREKLRGLT EDENNQRWLY VTEDDIKGLP 240
  241 CFQNETLIAI KAPHGTTLEV PDPDEAGDYL QRRYRIVLRS TMGPIDVYLV SQFDEKFEDL 300
  301 GGGATPSGHA NVPKHQPTEV FNTTNAGVGQ CSNSVAVDNN IQHSQTIPQD PSASHDFGGM 360
  361 TRIIPSDIDT DADYWLISEG DVSITDMWKT APDVQWDESL DTDVFLSEDV RTPSSHNQQP 420
  421 SAVGGPQMQV SDMHKP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.53
Transmembrane Helix	10	29	0.50
Non-Cytoplasmic	30	436	0.98