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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115479143, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGEGGGAP AAAAAVSNGF VHAVVRWCFS PLFFWLFTVA LVAAIHLAST YISPSRDEED  60
   61 KEKKARRGGD FAGAGEEREE EEVGRNDDKI LEMMRSFSFM HASEEDFMEG MATYDHVVAR 120
  121 MAPEPLPLTP PAAPPPSTFS FRFQHQLPEI LRETAVVSGE IPVQVLEEHE PEKKPAIAME 180
  181 SKQERERDAE EREVVMEEEE EEEQSREVVE AAAAAPMIVS TTHNYRFLTE RDFRGFVKEP 240
  241 EAITVRVQES FVPSPELEAV AVAAAAQPEE RRVVDGAPRR GFLTTNDFRP ANEPDSARQS 300
  301 VASQLGRKPA ASSPSAASRG SAAAAVSGRT SFASEFSGFG GDSDSESTAS DGYSVKDLVV 360
  361 DSDSDWFLSE KDFPAAAVAG HDAGSLRGYY KAKVLKALEA LDASASNLER SFQDSATTVS 420
  421 PGSVVGQASP DIIGAADDPA KYPEDMWSRS PSPDVEYNED EHKGNEATNM AEEVSFDMSD 480
  481 DERPPASGGK KTTAMAASSS SSSPVHDAES EDENSLDHSE KETITIHDHS YESVSDVKRR 540
  541 SPEAISDAEL DDASSRHAAV LDAKVRSPDV HSSEPIFDNY EEHEVSNDQS QAAVSDEKRS 600
  601 TPHSEREFAG TDDRSHELIS DVWKDIVGAN DQSLASAHDE ERSPDQSVAI ISDDHKAIVS 660
  661 ATNDSSNGEV SDHKSTPETA EQEFSGNDDP YELVADARII SERAEEDDIP NERPGNATRH 720
  721 VTFSVAEKGK VLDVVEEDQE DKWKDLTEEE EDELESLWEH QDLIEQLKLE LKKVRSIGLP 780
  781 TILEESETPK APMEDLKPWR IDAKFLREDP MDELNKFFKS YRERMRKFDI LCYQKMYAID 840
  841 FLQFRGPQQS ANSLKSLSPT VTSILSHNFR SSRRKSPEDP SERFLKELRY DLETVYVGQM 900
  901 CLSWEFLRWQ YEQAHDLPES DPYHSHQYNQ VAGEFQQFQV VVQRFVEDES FKGPRLPNYI 960
  961 NNRCVLRNLL QVPVIKEDSL KDRMEDQRKG NYVITSEELE EIMEECMRVF WEFIRSDRVE1020
 1021 TTSVLKGLSS THVELQDPLD HDLMMHIDST LQKKEKRLKD LLRTGNCIVK KFKKPKEDTL1080
 1081 NQSLFFSQVD MRLVARVLRM PRITSEQLQW CKAKLDKIAL VDRRIHREAS FLLFPC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle