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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17887457
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSLGARSNR RIKLRRFIIS PYDRRYRIWE TFLIVLVVYS AWVSPFEFGF IPKPTGALAT  60
   61 ADNVVNAFFA VDIILTFFVA YLDKMSYMLE DDPKKIAWRY STTWLVLDVA STIPSEFARR 120
  121 ILPSKLRSYG FFNMLRLWRL RRVSSLFSRL EKDRHFNYFW VRCAKLICVT LFAVHCAACF 180
  181 YYLLADRYPV PTSTWIGNYM ADFHERSLWI RYVTSVYWSI TTLTTVGYGD LHAENTREMI 240
  241 FNIFYMLFNL GLTAYLIGNM TNLVVHGTSR TRNYRDTIQA ATSFGVRNQL PPRLQDQMIS 300
  301 HISLKYRTDS EGLQQQEILD SLPKAIKSSI SQYLFFHLVQ NVYLFQGVSN DLIFQLVSEM 360
  361 KAEYFPPRED VILQNEAPTD FYILVSGSVE LVEQQNGADQ VIQVATSGEV VGEIGVLCYR 420
  421 PQLFTVRTRS LCQLLRLNRT AFLSIVQSNV GDGTIIMNNL IQFLKEQKEN SVMAGVVKEI 480
  481 ESMLARGNLD LPITLCFAVT RGDDFLLHQL LKRGMDPNES DNDGHTALHI AASKGNEQCV 540
  541 RLLLEYGADP NARDSEGKVP LWEALCEKHA AVVQLLVEGG ADLSSGDTGL YACIAVEESD 600
  601 TELLNDIIHY GGDVNRARRD GTTALHRAVC DGNVQMAELL LEHGADIDKQ DGNGWTPRAL 660
  661 AEQQGHDDIQ LLFRSRKAAT ASGHHHVPSS TTTRVAPAAA AASLIGRFNS EPMMKNMIHE 720
  721 DADLPSRVLP EKLRRKRVTF QNSLFGVISS SQAQRETDHP LSRGGLAATG SPNPSSGSRN 780
  781 AVIRVTISCP EKGNTAGKLV LLPQTLDMLL ELGAKKFDFA PTKVLTVEGA EVDEVELIRD 840
  841 GDHLVLVSDE WDAEKMKGKS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle