YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17861866
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMINYFQRVN ISAAIVPMTQ STAGAPFYTW DTSDKSLILS SFFWGYVVSQ VPAGLLAKRF  60
   61 GAKLVLGLAT AIGGILCFFH PIAAKSGWQS ICVLRVLTGL VQGTVYPCVH TLLAKWVPRT 120
  121 ERGLLTTGVY SGAQFGTAVI LVTSGFIFES SMGWPGLFYL SGGLSLAWAL LFFWQAANEP 180
  181 VTASRISKGE VEYIESLTGS NSSSQSMPVP WMSIFRSPAF YGLLAAHCGF TWGFYTLLTE 240
  241 MPTYMSMVLQ LNVKSNAFLS RCRTLLWACS ALWSVPYRIC LSTEALYRSP RLESCLIRLD 300
  301 SGDRWLV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	29	0.74
Non-Cytoplasmic	30	36	0.72
Transmembrane Helix	37	56	0.81
Cytoplasmic	57	63	0.80
Transmembrane Helix	64	84	0.95
Non-Cytoplasmic	85	90	0.90
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	123	0.85
Transmembrane Helix	124	148	0.87
Non-Cytoplasmic	149	155	0.79
Transmembrane Helix	156	177	0.91
Cytoplasmic	178	216	0.88
Transmembrane Helix	217	238	0.87
Non-Cytoplasmic	239	263	0.76
Transmembrane Helix	264	281	0.59
Cytoplasmic	282	307	0.68