YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17861858
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGIHHIHSF SVHCAVVSAV AAGQRLHLQL HSVRHHIGAG RLRAPRLLPC FPLGLPERPP  60
   61 SRTACQHSPS GHQCPACSVE IFPNANLVSP VADALKSFLS QVNWGRNGLG LALLSEEQSS 120
  121 SLKAIKPKVA SQAAVSNMTK VHHIHSGGER ERTKPNGHDA VSPHSVLLMD AFNPPSAGDY 180
  181 ASSRRPLLPR QSPIGGTDRD DNKYQRRTPA ELFSRWTRRF YAPSSRPPWR RTWFLVTAGI 240
  241 LAFVLFVYLM AWLGRGGSDA VDEGWNNPNP QPNHYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.37
Transmembrane Helix	7	26	0.37
Cytoplasmic	27	231	0.66
Transmembrane Helix	232	252	0.94
Non-Cytoplasmic	253	276	0.63