YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17862902
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLFRRLMN HQYLTQDQIN GFDNYKYSAI DTSPLSQYVM HPFWDWLVKF FPRWFAPNLM  60
   61 TFLGFLFSAM NLVLLSYYDW NFDASSGEEG TTPIPSWVWL CTAINIFLAY TLDGIDGKQA 120
  121 RRIGLSGPLG ELFDHGLDSY TAMLIPTCLY SIFGRSRVYS VRPMRMYYVC LTVYFNFFIS 180
  181 HWEKYNTGIL YLPWGYDLSM WGSTAMYLVT WWMGFERWKF ELPLGSYGTL PLGNVMEAVL 240
  241 HVSAMANLPL VIINVYNSYA HRTGRLLSFW EAVRPMWPFI TYFVILLAWP YVSPNDIMQK 300
  301 DPRAIFMLSG TIFSNVSCRL IVSQMSVTRC EAWHWQTPMF ILSFLTSLWI PLLERPLLYL 360
  361 LLIVTTLSHW QYGASVVNQM CEHFNRVCFT VHKRVPQEEL PKKKTLLAEE ISQADKPQAE 420
  421 EPLKKDI

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	75	0.90
Non-Cytoplasmic	76	93	0.84
Transmembrane Helix	94	114	0.83
Cytoplasmic	115	163	0.76
Transmembrane Helix	164	182	0.81
Non-Cytoplasmic	183	193	0.59
Transmembrane Helix	194	215	0.83
Cytoplasmic	216	231	0.55
Transmembrane Helix	232	256	0.60
Non-Cytoplasmic	257	272	0.44
Transmembrane Helix	273	293	0.88
Cytoplasmic	294	303	0.42
Transmembrane Helix	304	323	0.89
Non-Cytoplasmic	324	331	0.38
Transmembrane Helix	332	353	0.85
Cytoplasmic	354	427	0.48