YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DER21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAVEEWYK QMPIITRSYL TAAVVTTVGC SLEIISPYNL YLNPTLVVKQ YQFWRLVTNF  60
   61 LYFRKMDLDF LFHMFFLARY CKLLEENSFR GKTADFLYML LFGATVLTGI VLIGGMIPYL 120
  121 SVSFSKIIFL SNSLTFMMVY VWSKQNPYIH MSFLGLFTFT AAYLPWVLLG FSILVGASAW 180
  181 GDFLGMIAGH AYYFLAFVYP RMTDRRPLKT PSFLKALFAD EPVVIARPED VRFAHAPFDE 240
  241 IHQD

Type	Start	End	Confidence
Cytoplasmic	1	17	0.90
Transmembrane Helix	18	37	0.79
Non-Cytoplasmic	38	60	0.74
Transmembrane Helix	61	81	0.66
Cytoplasmic	82	95	0.85
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	123	0.70
Transmembrane Helix	124	142	0.92
Cytoplasmic	143	150	0.79
Transmembrane Helix	151	173	0.86
Non-Cytoplasmic	174	178	0.65
Transmembrane Helix	179	199	0.87
Cytoplasmic	200	244	0.95