YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17385792
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.92
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	52	0.98
Transmembrane Helix	53	73	0.91
Cytoplasmic	74	85	0.82
Transmembrane Helix	86	106	0.96
Non-Cytoplasmic	107	127	0.92
Transmembrane Helix	128	151	0.88
Cytoplasmic	152	204	0.99
Transmembrane Helix	205	224	0.59
Non-Cytoplasmic	225	231	0.49
Transmembrane Helix	232	253	0.60
Cytoplasmic	254	262	0.76
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	294	0.79
Transmembrane Helix	295	318	0.84
Cytoplasmic	319	334	0.75
Transmembrane Helix	335	352	0.90
Non-Cytoplasmic	353	355	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSHVIFSA SIALFLLLSI SHFPGALSQS NKDCQSKSNY SCIDKNKALD LKLLSIFSIL  60
   61 ITSLIGVCLP FFARSIPAFQ PEKSHFLIVK SFASGIILST GFMHVLPDSF EMLSSPCLND 120
  121 NPWHKFPFAG FVAMMSAVFT LMVDSITTSV FTKSGRKDLR ADVASVETPD QEIGHVQVHG 180
  181 HVHSHTLPHN LHGENDKELG SYLQLLRYRI LAISIVIGLS VGDTNNTCTI KGLVAALCFH 240
  241 QMFEGMGLGG CILQAEYGWV KKAVMAFFFA VTTPFGVVLG MALSKTYKEN SPESLITVGL 300
  301 LNASSAGLLI YMALVDLLAA DFMGQKMQRS IKLQLKSYAA VLLGAGGMSV MAKWA