YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17223091
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYYEHIVFE DDLSADNSSE FGSGDIGANF EVPCDVEVSH DFQRIFLPTV YGIIFVLGLI  60
   61 GNGLVVLVMG CQKKSRTMTD KYRLHLSVAD LLFVLTLPFW AVDAAKDWYF GGFMCVAVHM 120
  121 IYTVNLYSSV LILAFISLDR YLAVVRATNS QGPRKLLANR IIYVGVWLPA ALLTVPDLVF 180
  181 AKAESSAIRT FCERIYPQDS FVTWVVAFRF QHILVGFVLP GLVILICYCI IISKLSRGSK 240
  241 GTQKRKALKT TVVLIVCFFV CWLPYCGGIL LDTLMMLEVI PHSCELEQGL QKWIFVTEAL 300
  301 AYFHCCLNPI LYAFLGVKFK KSARSALSPS RGSSLKFLSK KRTGMSSVST ESESSSFHSS 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.97
Transmembrane Helix	49	71	0.91
Cytoplasmic	72	81	0.96
Transmembrane Helix	82	102	0.91
Non-Cytoplasmic	103	117	0.76
Transmembrane Helix	118	138	0.88
Cytoplasmic	139	155	0.89
Transmembrane Helix	156	180	0.82
Non-Cytoplasmic	181	209	0.97
Transmembrane Helix	210	232	0.92
Cytoplasmic	233	250	0.89
Transmembrane Helix	251	271	0.93
Non-Cytoplasmic	272	298	0.88
Transmembrane Helix	299	317	0.92
Cytoplasmic	318	360	0.95