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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1698802
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSVDANSI TITVEGMTCI SCVRTIEQQI GKVNGVHHIK VSLDEKSATI IYDPKLQTPK  60
   61 TLQEAIDDMG FDALLHNANP LPVLTNTVFL TVTAPLTLPW DHVQSTLLKT KGVTGVKISP 120
  121 QQRSAVVTII PSVVSASQIV ELVPDLSLDM GTQEKKSGAC EEHSTPQAGE VRLKMKVEGM 180
  181 TCHSCTSTIE GKVGKLQGVQ RIKVSLDNQE ATIVFQPHLI TAEEIKKQIE AVGFPAFIKK 240
  241 QPKYLKLGAI DVERLKNTPV KSSEGSQQKS PSYPSDSTTM FTIEGMHCKS CVSNIESALS 300
  301 TLQYVSSIVV SLENRSAIVK YNASLVTPEM LRKAIEAISP GQYRVSIASE VESTASSPSS 360
  361 SSLQKMPLNI VSQPLTQEAV ININGMTCNS CVQSIEGVIS KKPGVKSIHV SLANSTGTIE 420
  421 FDPLLTSPET LREAIEDMGF DAALPADMKE PLVVIAQPSL ETPLLPSSNE PENVMTSVQN 480
  481 KCYIQVSGMT CASCVANIER NLRREEGIYS VLVALTAGKA EVRYNPAVIQ PRVIAEFIRE 540
  541 LGFGAMVMEN AGEGNGILEL VVRGMTCASC VHKIESTLTK HKGIFYCSVA LATNKAHIKY 600
  601 DPEIIGPRDI IHTIGSLGFE ASLVKKDRSA NHLDHKREIK QWRGSFLVSL FFCIPVMGLM 660
  661 VYMMVMDHHL ATLHHNQNMS NEEMINMHSA MFLERQILPG LSIMNLLSLL LCLPVQFCGG 720
  721 WYFYIQAYKA LKHKTANMDV LIVLATTIAF AYSLVILLVA MFERAKVNPI TFFDTPPMLF 780
  781 VFIALGRWLE HIAKGKTSEA LAKLISLQAT EATIVTLNSE NLLLSEEQVD VELVQRGDII 840
  841 KVVPGGKFPV DGRVIEGHSM VDESLITGEA MPVAKKPGST VIAGSINQNG SLLIRATHVG 900
  901 ADTTLSQIVK LVEEAQTSKA PIQQFADKLS GYFVPFIVLV SIVTLLVWII IGFQNFEIVE 960
  961 TYFPGYNRSI SRTETIIRFA FQASITVLCI ACPCSLGLAT PTAVMVGTGV GAQNGILIKG1020
 1021 GEPLEMAHKV KVVVFDKTGT ITHGTPVVNQ VKVLVESNKI SRNKILAIVG TAESNSEHPL1080
 1081 GAAVTKYCKK ELDTETLGTC TDFQVVPGCG ISCKVTNIEG LLHKSNLKIE ENNIKNASLV1140
 1141 QIDAINEQSS TSSSMIIDAH LSNAVNTQQY KVLIGNREWM IRNGLVISND VDESMIEHER1200
 1201 RGRTPVLVTI DDELCGLIAI ADTVKPEAEL AVHILKSMGL EVVLMTGDNS KTARSIASQV1260
 1261 GITKVFAEVL PSHKVAKVKQ LQEEGKRVAM VGDGINDSPA LAMANVGIAI GTGTDVAIEA1320
 1321 ADVVLIRNDL LDVVASIDLS RKTVKRIRIN FVFALIYNLV GIPIAAGVFL PIGLVLQPWM1380
 1381 GSAAMAASSV SVVLSSLFLK LYRKPTYDNY ELHPRSHTGQ RSPSEISVHV GIDDTSRNSP1440
 1441 RLGLLDRIVN YSRASINSLL SDKRSLNSVV TSEPDKHSLL VGDFREDDDT TL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle