YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46577788
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	27	0.88
Non-Cytoplasmic	28	46	0.87
Transmembrane Helix	47	67	0.94
Cytoplasmic	68	79	0.85
Transmembrane Helix	80	100	0.96
Non-Cytoplasmic	101	121	0.88
Transmembrane Helix	122	144	0.84
Cytoplasmic	145	195	0.93
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	226	0.76
Transmembrane Helix	227	248	0.84
Cytoplasmic	249	257	0.82
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	287	0.81
Transmembrane Helix	288	310	0.90
Cytoplasmic	311	329	0.80
Transmembrane Helix	330	347	0.92
Non-Cytoplasmic	348	350	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTKPFSI FLFLFCFFSS KLFHNLMNVK PQPHSCTNKD KALRLKIIAI FSILIASVIG  60
   61 VGSPLVTRSI PMLHPDRNMF VILKAFAAGI ILATGFMHVL PDSFDMLWSN CLKENPWHKF 120
  121 PFSGFVAMMS AIVTLMVDSM ATSLYTKKHN EVMPENSPRG GDDHELPVVS GGHFHGHHHM 180
  181 DTKETNAGSQ LLRYRVVAMV LELGIVVHSV VIGLSLGATN DTCTIKGLVA ALCFHQMFEG 240
  241 MGLGGCILQA EYKWMKKAIM VFFFSVTTPF GIALGIGLSK TYKENSPVAL VTVGLLNASS 300
  301 AGLLIYMALV DLLSADFMGP KLQGSIKLQV KSYIAVLLGA GGMSLMAKWA