YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48473948
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.87
Transmembrane Helix	71	90	0.48
Non-Cytoplasmic	91	91	0.40
Transmembrane Helix	92	118	0.73
Cytoplasmic	119	173	0.54
Transmembrane Helix	174	196	0.87
Non-Cytoplasmic	197	247	0.60
Transmembrane Helix	248	270	0.77
Cytoplasmic	271	280	0.79
Transmembrane Helix	281	302	0.74
Non-Cytoplasmic	303	329	0.77
Transmembrane Helix	330	356	0.76
Cytoplasmic	357	401	0.64
Transmembrane Helix	402	423	0.82
Non-Cytoplasmic	424	429	0.58
Transmembrane Helix	430	447	0.83
Cytoplasmic	448	464	0.72
Transmembrane Helix	465	492	0.84
Non-Cytoplasmic	493	713	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERRRGGYR VEREVLDELS VEEVAEKTDS KVPLSEKVRE SVRCSGSRVK RCVLGCVPVL  60
   61 SWLPRYNFRE WAPGDLVSGI SVGIMHLPQG MAYALLAAVP PVFGLYSSFY PILVYFIFGT 120
  121 SRHISVGTYA VMSVMIGGVT ERLAPDSDFL LWNNETNGSV LDVAARDAER VKVAAAVTFL 180
  181 SGVFQILLGL VQFGFVVTYL SEPLVRGYTT GAAIHVIVSQ LKYTFGLSPT RFSGPFSLLY 240
  241 TVLEICSLLP ETNIGTLVVS AVSVIALIGA KEINTLLARK LPVPIPVELI TIIIATVISS 300
  301 QFNLDTQFGV EVVGEIPSGL QPPVLPAASI FGQVIGDAFA LSVVGYGIAI SLGRIFALKY 360
  361 GYKVDSNQEL VALGLSNSVG GMFQCFAISC SMSRTMVQES TGGKTQVASG LSAVVILIIL 420
  421 LKLGELFQQL PKAVLAAIIF VNLHGMMKQF MDIRSLWRSN RVDMIVWVMT FILTLLFNPD 480
  481 LGLAASIAFS MLTVIFRTQL PRYSILGQVP GTDIYRPVEE YKLVKQIPGL VIFRSSATLY 540
  541 FANAEMYVDA LAEKSGIDIA KILSIKKKQQ AKQLRREKRE AKRQRKEMKE AKREEGEMEE 600
  601 PQNGQTDEVN VEEGLQPGPA LPSAIILDLS PVNFLDTVGV KTLRNICRDY GDVGVAVFLS 660
  661 GCQDCVVENL ERGGFFSDKV TKAAIFSTVH DAVLHCQRDA SSETTQAMNG TYF