YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMO22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN  60
   61 TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF PLPSWKEVSA QILFYFIIED 120
  121 FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL 180
  181 ITLWLWMVLR VLETVEAHCG YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY 240
  241 MDWIFGTDKG YRRLKTLKEN GDMKQT

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.56
Transmembrane Helix	21	44	0.82
Cytoplasmic	45	71	0.63
Transmembrane Helix	72	92	0.83
Non-Cytoplasmic	93	161	0.49
Transmembrane Helix	162	186	0.82
Cytoplasmic	187	266	0.66