YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21622587
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	40	0.73
Transmembrane Helix	41	60	0.90
Cytoplasmic	61	78	0.95
Transmembrane Helix	79	102	0.90
Non-Cytoplasmic	103	128	0.95
Transmembrane Helix	129	150	0.91
Cytoplasmic	151	158	0.87
Transmembrane Helix	159	179	0.90
Non-Cytoplasmic	180	196	0.91
Transmembrane Helix	197	220	0.86
Cytoplasmic	221	238	0.74
Transmembrane Helix	239	260	0.85
Non-Cytoplasmic	261	287	0.68
Transmembrane Helix	288	309	0.93
Cytoplasmic	310	337	0.67
Transmembrane Helix	338	360	0.87
Non-Cytoplasmic	361	368	0.56
Transmembrane Helix	369	389	0.92
Cytoplasmic	390	403	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQTHTYHM VNPSPWPLTG ALSTLLMTSG LIMWFHFNST HLLLLGLMTS VLTMCQWWRD  60
   61 IVRESTFQGH HTPTVQKGLR YGMILFITSE VFFFAGFFWA FYHSSLAPTP ELGGCWPPTG 120
  121 ITPLNPLEVP LLNTSVLLAS GVSITWAHLC LMEGNRKHML QALFITILLG LYFTLLQASE 180
  181 YYETSFTISD GIYGSTFFVA TGFHGLHVII GSTFLIVCFL RQLKFHFTSN HHFGFEAAAW 240
  241 YWHFVDVVWL FLYVSIYWWG SCFLSINKYG RLPINQVLVM TQKKAMNMIL TLLTNTALAS 300
  301 LLMLIAFWLP QLNTYSEKAS PYECGFDPMG SARLPFSMKF FLVAITFLLF DLEIALLLPL 360
  361 PWASHANNMT TVLTTALMLI SLLAASLAYE WAEKGLEWTE YDN