YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46102542
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSYLAFPN IDPVMFSIGP VSLHWYGFMY LVGFVFAMWL ANRRAAKPDS GWNKAEVENL  60
   61 LYAGFVGVFV GGRLGYVLFY NLPMFLDNPL YLFKVWDGGM SFHGGLVGVV CAMWWFSCRT 120
  121 KRHFLQTADF VAPLVPFGLG MGRIGNFING ELWGRVTLDT SWAVLFPSSR SEDITQAMSH 180
  181 PSLWPVLEKY GVLPRHPSQL YEMVLEGIVL FIILNVFIRK SRPMGSVSGL FLIGYGAFRI 240
  241 IVEFFRQPDA QLGLFEGISM GQLLSVPMIL AGIIMMVWAY KCPRNKARND KIQEAK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.94
Cytoplasmic	42	59	0.93
Transmembrane Helix	60	80	0.94
Non-Cytoplasmic	81	98	0.90
Transmembrane Helix	99	118	0.94
Cytoplasmic	119	126	0.85
Transmembrane Helix	127	147	0.82
Non-Cytoplasmic	148	199	0.89
Transmembrane Helix	200	218	0.89
Cytoplasmic	219	224	0.86
Transmembrane Helix	225	242	0.93
Non-Cytoplasmic	243	257	0.83
Transmembrane Helix	258	280	0.89
Cytoplasmic	281	296	0.95