YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33469574
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.81
Transmembrane Helix	13	33	0.93
Cytoplasmic	34	40	0.70
Transmembrane Helix	41	61	0.90
Non-Cytoplasmic	62	71	0.66
Transmembrane Helix	72	96	0.83
Cytoplasmic	97	115	0.70
Transmembrane Helix	116	134	0.79
Non-Cytoplasmic	135	135	0.35
Transmembrane Helix	136	157	0.76
Cytoplasmic	158	160	0.51
Transmembrane Helix	161	187	0.76
Non-Cytoplasmic	188	194	0.79
Transmembrane Helix	195	214	0.88
Cytoplasmic	215	224	0.70
Transmembrane Helix	225	243	0.92
Non-Cytoplasmic	244	252	0.66
Transmembrane Helix	253	270	0.94
Cytoplasmic	271	305	0.93
Transmembrane Helix	306	324	0.87
Non-Cytoplasmic	325	368	0.83
Transmembrane Helix	369	391	0.91
Cytoplasmic	392	409	0.84
Transmembrane Helix	410	431	0.87
Non-Cytoplasmic	432	444	0.53
Transmembrane Helix	445	463	0.75
Cytoplasmic	464	530	0.52
Transmembrane Helix	531	550	0.93
Non-Cytoplasmic	551	555	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQAWLQQYD PTGNIWLSAL IALIPIIFFF LALTKLRMKG YQAGTITVLL ALGVALFFYR  60
   61 MPVSTAFASV VYGFFYGLWP IAWIIVAAVF LYKISVKTGQ FDIIRASILS ITPDQRLQLI 120
  121 LVGFCFGAFL EGAAGFGAPV AITAALLAGL GFRPLYAAGL CLIANTAPVA FGAMGIPIIV 180
  181 AGQVSGIDPF HIGQMAGRQL PFMTIIVLFW LMAIMDGWRG IKETWPAVLV GGGSFALVQF 240
  241 LTANYIGPEL PDITSALVSL VALTLFLKVW QPKRIFRFDE QEATPVQSDV AQQATLPLTT 300
  301 GRIIKAWSPF IILTVMVTIW SVQPFKVLFA ANGPLASTIV NIPVPFLHNL VEKAPPVVAS 360
  361 ATPYGAVYAF NWLSATGTAI LIAALLTILF LRMKPAKAVE TLGETFKELA VPIYSIGMVL 420
  421 AFAFIANYSG LSATLALALA HTGKAFTFFS PFLGWIGVFL TGSDTSANAL FGALQATTAQ 480
  481 QLGLPEVLMV AANTTGGVTG KMISPQSIAI ACAAVGLAGK ESDLFRFTVK HSLIFAVLIG 540
  541 LLTTLQAYVL PWMIP