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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32400189
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPGSPEIH AAVQGSEQGA LPVGPLRIED EEEEDLNKTW GVERFDDLLH DASSRCVDEV  60
   61 RRTFDEADFE YHRHSSLHTH HPLSTHMPSE GRRKKGTQKK SKKTASSPTG APTIDEGDED 120
  121 DDHSDGTQEK KEPAEGGMQP DAAANVQFFM PDEELENNAA SLSPPDRSPK QQDVPSPLSE 180
  181 PGIILPHSHL GRSSERMALR AAAVSAPSLL EENRVLLKTP LTHRSSYDLK ERRRIGSQTN 240
  241 VDEAKFQKIP TDELEAEMLA VADLDYMKSH RFEDVPGVRR HLVRRSNKGT VVHVSKDQSE 300
  301 LYPKAKKPDR KPHEVFVELN ELTMDKNHEM QWKETARWIK FEEDVEEETD RWGKPHVASL 360
  361 SFRSLLELRK TLAHGTVLLD LDQRTLPGIA HQVVEQMIIS DQIKAEDRAN VLRALLLKHC 420
  421 HPNKDKDFSF SRNISTASLG SLMAHHQSQN HIAPSSEPSV TQPLMGESTD ADVKVMVDSI 480
  481 EKECPLSEMA RSRSKHELKL MEKIPCNAEA TVVLVGCVEF LEHPTMAYVR LQTAVELESV 540
  541 LEVPVPVRFL FILLGPTNSN MDYHEIGRSI STLMSDKNFH RAAYQADDRN DLLNAINEFL 600
  601 DSSIVVPPSD VPGEELLLSV AQFQRKMLKK RQAKEEQVLS KEVKSQEERA LLKRKRLDED 660
  661 DPLRRTGKPF GGVIRDAARR YPQYLSDFKD ALNPQCMAAI IFIYFAALSP AITFGGLLGE 720
  721 KTMGLIGVSE LIISTAIQMI IFGLLGAQPL LIVGFSGPLL VFEEAFFKFC DSNGMEYLTG 780
  781 RVWIGFWLIA IVLLIVAFEG SFLVRFISRF TQEIFASLIS IIFIYETFYK LVKIFKDHPL 840
  841 RGCSNSTLNG TFLPLIPPSP SNETTEGVRR TGEPNTALLS LVLMAGTFFI AFFLRKFKNS 900
  901 RFFPGRVRRV IGDFGVPIAI LIMVLVDYSI QETFTQKLSV PTGLSVTSPE KRGWFINPLG 960
  961 KNGDFPIWMM FASVIPAILV FILIFMETMI TTLIISKKER MLTKGSGFHL DLLIIVGSGG1020
 1021 VAAMFGLPWL AAATVRTVTH VNALTVMSKS VAPGDKPKIE EVKEQRVTGL VVAIMVGLSI1080
 1081 VIGDLLRKIP LAVLFGIFLY MGVTSLNGID LYERIQLLLM PSKHHPDHMY VRKVRTLRMH1140
 1141 LYTIVQVFCL AVLWAVMSTV ASLAFPFVLI LTVPVKMFAL TRIFTDRELK CLDADDAQPT1200
 1201 FDEKEGLDEY DELSMPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle