YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62471633, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.86
Transmembrane Helix	57	76	0.74
Non-Cytoplasmic	77	84	0.56
Transmembrane Helix	85	105	0.87
Cytoplasmic	106	239	0.60
Transmembrane Helix	240	258	0.83
Non-Cytoplasmic	259	337	0.87
Transmembrane Helix	338	355	0.89
Cytoplasmic	356	366	0.73
Transmembrane Helix	367	387	0.94
Non-Cytoplasmic	388	409	0.90
Transmembrane Helix	410	432	0.89
Cytoplasmic	433	448	0.80
Transmembrane Helix	449	472	0.86
Non-Cytoplasmic	473	510	0.90
Transmembrane Helix	511	533	0.86
Cytoplasmic	534	542	0.88
Transmembrane Helix	543	565	0.88
Non-Cytoplasmic	566	576	0.80
Transmembrane Helix	577	599	0.91
Cytoplasmic	600	617	0.94
Transmembrane Helix	618	641	0.91
Non-Cytoplasmic	642	659	0.90
Transmembrane Helix	660	681	0.92
Cytoplasmic	682	739	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTQRNHQN LAFVGDDGRS TASTVEISTN SPALRDNSDD QEAAKVPEER ATWGKGVEFL  60
   61 MSCIAMSVGL GNVWRFPFTA LDNGGGAFLI PYLIVLFLIG KPIYYLEMVI GQFSSRGSVK 120
  121 VFDLCPAMKE YDNSELQNLH RHSVHQLARS CPKYATTSIG VGIGQVISIS MVTTYYVAIM 180
  181 GITLRYLYES FRSPLPWSEC RPEWESFCVA SSLGNTSQSL ASPMDMDSLP QRQPVASAEL 240
  241 YFLTYYAALV AIIGRYFIES FRNPLPWSTC RAEWGIHCIN SAPDASNWSQ LESNDQRPQN 300
  301 YTMKSQNDRV ITSSEWYFVK EVLHEKPNIE EGIGLPNWEL VIGLFIAWSC VFFIIRRGVK 360
  361 SSGKASYFLA LFPYVIMGVL LVRAVTLPGS IDGIYYFIKP QWGKILDPKV WYAAVTQCFY 420
  421 SLSVCFGNII MYSSFNKFGH NVHRDAAIVT GLDTMTSLLA GFTIFGILGH LAHEIGTDDI 480
  481 GSVVKGGAGL AFISYPDAIA KFKNLPQIFS VLFFLMLFVL GIGSNIAMTS CSVTAIRDRF 540
  541 PNFGQWQCSL LIAVVSFFIG LMYITPGGQY MLTLVDFFGA SMIALVLGIA ELYTIGWIYG 600
  601 TDRLCKDIEF MLGRKVGLYW RLCWSIITPL IMTVILIYFY ATYQPLTYNN IVYPNWSYSI 660
  661 GWLITAFGIL QLPIWMIVAI VRDPGQTLGA KIRGAFTPKK NWGPSDPLLR EQYHKEIENE 720
  721 LTPKRGQGIW AAIKQNIFG