YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17025878
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDVEGQEQ GGEFSAKDYQ DPPPAPLFDL DELTKWSLYR AVIAEFVATL LFLYITVLTI  60
   61 IGYSRQSDTT IKGNTECDGV GVLGIAWAFG GMIFILVYCT AGISGGHINP AVTFGLFVGR 120
  121 KVSLIRAFLY IVAQCLGAIC GAGLAKGFQT SYYNRYKGGV NTVSDGYSKG TALGAEIIGT 180
  181 FVLVYTVFSA TDPKRSARDS HVPVLAPLPI GFAVFMVHLA TIPVTGTGIN PARSFGPAVI 240
  241 FNNEKAWDDQ WIYWVGPFIG AAVAAIYHQY ILRGSAIKAL GSFRSNA

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	63	0.90
Non-Cytoplasmic	64	84	0.89
Transmembrane Helix	85	108	0.84
Cytoplasmic	109	126	0.76
Transmembrane Helix	127	145	0.97
Non-Cytoplasmic	146	169	0.87
Transmembrane Helix	170	189	0.93
Cytoplasmic	190	201	0.86
Transmembrane Helix	202	222	0.89
Non-Cytoplasmic	223	250	0.88
Transmembrane Helix	251	271	0.95
Cytoplasmic	272	287	0.95