YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19912725
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.38
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRMAGSVL LRRAGAGAGR LFATTASPAA RTALGGGGGA WVRMMSTSAA SQVKDEAAKG  60
   61 VKAEAAKGDG EKKEVAISSY WGIDQSKKLV REDGTEWKWS CFRPWETYTA DTSIDLTKHH 120
  121 VPNTMLDKIA YYTVKSLRFP TDIFFQRRYG CRAMMLETVA AVPGMVGGML LHLRSLRRFE 180
  181 QSGGWIRALL EEAENERMHL MTFMEVAQPR WYERALVIAV QGVFFNAYFF GYLISPKFAH 240
  241 RVVGYLEEEA VHSYTEFLKD LDDGKIDNVP APAIAIDYWR LPANATLKDV VTVVRADEAH 300
  301 HRDVNHFASD VYYQGMQLKA TPAPIGYH

Type	Start	End	Confidence
Signal Peptide	1	32	0.58
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	152	0.82
Transmembrane Helix	153	173	0.59
Cytoplasmic	174	210	0.46
Transmembrane Helix	211	232	0.45
Non-Cytoplasmic	233	328	0.72