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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13183375
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.62
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWWNKGCIY LAYITLISKN SNAELIPAKN FTSRDYFAVE SHLSAAELSK LHPDSISMGG  60
   61 ELSKLHPDWT FEHLVRGLDN HYVFSVAKSE NEDDIDSGNS LRKRAIENED HILSSEFLTP 120
  121 SNKLQKRMPV PAPPLDSSML PIQEIKDKIG INDPLFPKQW HLINPAFPGN DINVKDVWLQ 180
  181 NITGKGVVAA IIDDGVDYTS PDLKDNFCKE GSWDFNENQQ LPMPLLSDDN HGTRCAGEIA 240
  241 AIRNNNYCGV GVAYDAKVSG IRILSGPLTA EDEAASLVHA LDVNDIYSCS WGPTDDGKHL 300
  301 QGPSPLVKKA MKKGVTEGRG NKGAIYVFAS GNGGMHGDNC NYDGYTNSIY SITVGAIDHK 360
  361 GLHPPYSESC SAVLVVTYSS GSGEYIHSTD INGGCYDRHG GTSAAPAIDT RIYALVLEAN 420
  421 PNITWRDMQY LSILSSETIE NNLEDGDWQT TKLEKKYSHK YGYGKLNAHN IVALAKDWEN 480
  481 VNPQVEFATD IKEVNEETDK EDKPIESTIE ITASDLEKAK FRSVEHVTIN VDISTENRGT 540
  541 TTIDLISPFG VVSHLGVVRR KDDSNEGFRD WTFMSVAHWG ELGSGEWKLI VKTTSDDDKV 600
  601 ESHSWSITLF GLSEYSEQKL KEGDIPSEND DDNRKEDGPG TDNNNVTEET GSDQQPETEN 660
  661 PENDGDNGTD KNTGHHMTPT IPTGVHLIVS IFIIGCVFLL LHFMFFVRTR RRIKRVRASN 720
  721 YDYDVIDTDA EYDSTNESSS TPLPDTFRLS DIDDNEFDIS DEENTQYNHL FNNDESLDQR 780
  781 LLDSDNPEQN PTGEQAQTHS SDT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle