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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3882341
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRREAVWFEV VNMDFSRLHM YSPPQCVPEN TGYTYALSSS YSSDALDFET EHKLDPVFDS  60
   61 PRMSRRSLRL ATTACTLGDG EAVGADSGTS SAVSLKNRAA RTTKQRRSTN KSAFSINHVS 120
  121 RQVTSSGVSY GGTVSLQDAV TRRPPVLDES WIREQTTVDH FWGLDDDGDL KGGNKAAIQG 180
  181 NGDVGVAAAT AHNGFSCSNC SMLSERKDVL TAHPAAPGPV SRVYSRDRNQ KCDDCKGKRH 240
  241 LDAHPGRAGT LWHIWACAGY FLLQILRRIG AVGQAVSRTA WSALWLAVVA PGKAASGVFW 300
  301 WLGIGWYQFV TLISWLNVFL LTRCLRNICK FLVLLIPLFL LLAGLSLRGQ GNFFSFLPVL 360
  361 NWASMHRTQR VDDPQDVFKP TTSRLKQPLQ GDSEAFPWHW MSGVEQQVAS LSGQCHHHGE 420
  421 NLRELTTLLQ KLQARVDQME GGAAGPSASV RDAVGQPPRE TDFMAFHQEH EVRMSHLEDI 480
  481 LGKLREKSEA IQKELEQTKQ KTISAVGEQL LPTVEHLQLE LDQLKSELSS WRHVKTGCET 540
  541 VDAVQERVDV QVREMVKLLF SEDQQGGSLE QLLQRFSSQF VSKGDLQTML RDLQLQILRN 600
  601 VTHHVSVTKQ LPTSEAVVSA VSEAGASGIT EAQARAIVNS ALKLYSQDKT GMVDFALESG 660
  661 GGSILSTRCS ETYETKTALM SLFGIPLWYF SQSPRVVIQP DIYPGNCWAF KGSQGYLVVR 720
  721 LSMMIHPAAF TLEHIPKTLS PTGNISSAPK DFAVYGLENE YQEEGQLLGQ FTYDQDGESL 780
  781 QMFQALKRPD DTAFQIVELR IFSNWGHPEY TCLYRFRVHG EPVK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle