YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15420782
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGLGFRQNRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSISQE ESRQDVIYQN LTQLKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKQ 120
  121 QEIYQELTRL KAAVGELPEK SKMQEIYQEL TRLKAAVGEL PEKSKMQEIY QELTRLKAAV 180
  181 GELPEKSKQQ EIYQELTRLK AAVGELPEKS KQQEIYQELT RLKAAVGELP EKSKQQEIYQ 240
  241 ELTQLKAAVE RLCRRCPWEW TFFQGNCYFM SNSQRNWHDS ITACKEVGAQ LVVIKSAEEQ 300
  301 NFLQLQSSRS NRFTWMGLSD LNEEGTWQWV DGSPLLPSFN QYWNRGEPNN VGEEDCAEFS 360
  361 GNGWNDDKCN LAKFWICKKS AASCSRDEEQ FLSPAPATPN PPPA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.81
Transmembrane Helix	36	58	0.77
Non-Cytoplasmic	59	404	0.99