YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16769902
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTPKIKAP VSGPGLPLLL QMLMGMLLMG LTSVPGATAT ADPKNANVKG LDRLHAGLFT  60
   61 NYDSDVQPVF QGTPTNVSLG MVVTYIDIDE LNGKLTTHCW LNLRWRDEER VWQPSQYDNI 120
  121 TQITLKSSEV WTPQITLFNG DEGGLMAETQ VTLSHDGHFR WMPPAVYTAY CELNMLNWPH 180
  181 DKQSCKLKIG SWGLKVVLPE NGTARGESLD HDDLVQSPEW EIVDSRAHFV SQDYYGYMEY 240
  241 TLTAQRRSSM YTAVIYTPAS CIVILALSAF WLPPHMGGEK IMINGLLIIV IAAFLMYFAQ 300
  301 LLPVLSNNTP LVGECSPLPF HQFSSEN

Type	Start	End	Confidence
Signal Peptide	1	41	0.96
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	251	0.99
Transmembrane Helix	252	272	0.95
Cytoplasmic	273	280	0.89
Transmembrane Helix	281	301	0.93
Non-Cytoplasmic	302	327	0.95