YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16769888
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.91
Transmembrane Helix	19	38	0.91
Non-Cytoplasmic	39	129	0.93
Transmembrane Helix	130	149	0.90
Cytoplasmic	150	159	0.80
Transmembrane Helix	160	178	0.97
Non-Cytoplasmic	179	185	0.75
Transmembrane Helix	186	207	0.92
Cytoplasmic	208	215	0.92
Transmembrane Helix	216	238	0.93
Non-Cytoplasmic	239	244	0.80
Transmembrane Helix	245	264	0.95
Cytoplasmic	265	343	0.99
Transmembrane Helix	344	363	0.91
Non-Cytoplasmic	364	371	0.81
Transmembrane Helix	372	392	0.94
Cytoplasmic	393	400	0.81
Transmembrane Helix	401	420	0.95
Non-Cytoplasmic	421	425	0.82
Transmembrane Helix	426	449	0.89
Cytoplasmic	450	456	0.87
Transmembrane Helix	457	480	0.83
Non-Cytoplasmic	481	488	0.70
Transmembrane Helix	489	509	0.94
Cytoplasmic	510	567	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYDEAIIHL GDFGRYQKII YFLICLTSIP VAFHKLAGVF LLAKPDFRCA LPFENGSIYE  60
   61 LPTHLWNLSY PENERCSYYD VDYTEEYLNG SIPRSSNETK TCSSYVYDRS KYLNSAVTEW 120
  121 NLVCGRDFMA ATSDSLFMLG VLLGSIVFGQ LSDKYGRKPI LFASLVIQVL FGVLAGVAPE 180
  181 YFTYTFARLM VGATTSGVFL VAYVVAMEMV GPDKRLYAGI FVMMFFSVGF MLTAVFAYFV 240
  241 HDWRWLQIAL TLPGLIFMFY YWIIPESARW LLLKGRKDCA IANMQKAARF NKVEISDEAL 300
  301 SELLDEGENS EEKAKQKLED QELDEGPPPS VWDLFCYPNL RRKTLLIFLD WLVTSGVYYG 360
  361 LSWNTSNLGG NVLLNFVISG AVEIPAYIFL LLTLNRWGRR SILCGCLVMT GLSLLATVII 420
  421 PQRMHTLIVA CAMLGKLAIT ASYGTVYIFS AEQFPTVVRN VAMGAASMVA RISGMMAPFL 480
  481 NFLATIWKPL PLLICGSLTL VAGLLSLLLP ETHNKPMLET IADGERFGKK TKADVYLETG 540
  541 QELRAPEAQP LKGSGETNGS TIANGHK