YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16769830
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.77
Transmembrane Helix	32	52	0.87
Non-Cytoplasmic	53	63	0.73
Transmembrane Helix	64	87	0.89
Cytoplasmic	88	98	0.84
Transmembrane Helix	99	120	0.90
Non-Cytoplasmic	121	126	0.82
Transmembrane Helix	127	148	0.95
Cytoplasmic	149	188	0.96
Transmembrane Helix	189	208	0.90
Non-Cytoplasmic	209	231	0.86
Transmembrane Helix	232	252	0.93
Cytoplasmic	253	258	0.89
Transmembrane Helix	259	277	0.93
Non-Cytoplasmic	278	284	0.64
Transmembrane Helix	285	304	0.85
Cytoplasmic	305	319	0.83
Transmembrane Helix	320	343	0.92
Non-Cytoplasmic	344	351	0.89
Transmembrane Helix	352	373	0.93
Cytoplasmic	374	388	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVECFIPA FCGLFAGSWA DHYGRKPLLM CSFLGYGLQY LISAAISYCA MYTQGLVSPW  60
   61 WYVLSIVPLS CLGSSVTYSV AAVCFIADVS GGKVRFYRMI AYELAIYVGL LLGSLGSGYA 120
  121 YEATDAYIVF SISAVCIFTA LFLMALLLPE SLPARNRTLS TPTTDTSVVS MLKSLWSTCS 180
  181 KPREHQNRFM LTTIMVVLLL TAFVSDGSNS VFYKFMRIKF HWTVKQFTEY ETVGILVPAV 240
  241 AGSGGVLFIW SLRKCTNSAI LWLALVSLLS HGSSSLMKGF ALESWQIYVA IGLGVFKSLV 300
  301 NPMCRTMITN LLPADERGKI FALLGVLQAL SPLISSTLYV AIYTRTLNTE PGIFNVFSAF 360
  361 LFGIGIILLG TVWHKKSRNL VYYEPVFK